Rn01511579_m1 Best Coverage

• Gene Symbol: Tfeb
• Gene Name: transcription factor EB
• Gene Aliases: Tcfeb
• Chromosome Location: Chr.9: 15208141 - 15263966 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tfeb
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001025707.1	NP_001020878.1	3 - 4	795		120
	XM_006244440.2	XP_006244502.1	4 - 5	1724		120
	XM_006244442.1	XP_006244504.1	4 - 5	714		120
	XM_006244446.2	XP_006244508.1	4 - 5	1985		120
GenBank mRNA	BC099102.1	-	3 - 4	795	7460021	120

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900001531.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tfeb

Gene Ontology Categories:

Process(es)

embryonic placenta development
transcription from RNA polymerase II promoter
humoral immune response
lysosome organization
positive regulation of autophagy
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P975634	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	230001	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	877930	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	505219	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	233282	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P975634	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P975634	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P975634	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P157179	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P975634	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	90173	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10926289	-	-
Affymetrix Rat Gene 1.0 ST Array	10926291	-	-
Affymetrix Rat Gene 1.0 ST Array	10926292	-	-
Affymetrix Rat Gene 1.0 ST Array	10926298	-	-
Affymetrix Rat Gene 1.0 ST Array	10926296	-	-
Affymetrix Rat Gene 1.0 ST Array	10926290	-	-
Affymetrix Rat Gene 1.0 ST Array	10926295	-	-
Affymetrix Rat Gene 1.0 ST Array	10926294	-	-
Affymetrix Rat Gene 1.0 ST Array	10926293	-	-
Affymetrix Rat Gene 1.0 ST Array	10926297	-	-
Affymetrix Rat Gene 1.1 ST Array	10926288	-	-
Rat Genome 230 2.0 Array	1373327_at	-	-
Rat Genome 230 2.0 Array	1373327_PM_at	-	-
Affymetrix HT Rat Focus Array	1373327_at	-	-
Affymetrix HT Rat Focus Array	1373327_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900012711.rn.1	TC0900001531.rn.1	RTA TC
Rat Expression Set 230	1373327_at	-	-
Rat Expression Set 230	1373327_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10926288	-	-
Rat Genome U34 Set	rc_AI013379_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21554946	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1352113	-	-