Rn01512482_m1 Best Coverage

• Gene Symbol: Nkx2-1
• Gene Name: NK2 homeobox 1
• Gene Aliases: TTF1, Titf1
• Chromosome Location: Chr.6: 77418096 - 77423383 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nkx2-1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013093.1	NP_037225.1	1 - 2	373		105
	XM_006240116.2	XP_006240178.1	2 - 3	654		105
	XM_006240117.2	XP_006240179.1	2 - 3	727		105
	XM_006240118.2	XP_006240180.1	2 - 3	1238		105
GenBank mRNA	AB894119.1	-	1 - 2	372		105
	X53858.1	-	1 - 2	373		105

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002504.rn.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
neuron migration
regulation of blood volume by renin-angiotensin
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
phospholipid metabolic process
pattern specification process
axon guidance
brain development
endoderm development
circadian rhythm
locomotory behavior
feeding behavior
response to hormone
animal organ morphogenesis
positive regulation of gene expression
negative regulation of epithelial to mesenchymal transition
telencephalon development
globus pallidus development
hippocampus development
cerebral cortex cell migration
forebrain dorsal/ventral pattern formation
forebrain neuron fate commitment
forebrain neuron differentiation
cerebral cortex GABAergic interneuron differentiation
cerebral cortex neuron differentiation
pituitary gland development
telencephalon cell migration
lung development
negative regulation of cell migration
negative regulation of transforming growth factor beta receptor signaling pathway
thyroid gland development
forebrain development
developmental induction
response to lipopolysaccharide
Leydig cell differentiation
hyperosmotic salinity response
positive regulation of circadian rhythm
response to ethanol
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
development of primary female sexual characteristics
anatomical structure formation involved in morphogenesis
neuron fate commitment
oligodendrocyte differentiation
lung saccule development
epithelial tube branching involved in lung morphogenesis
club cell differentiation
type II pneumocyte differentiation

Function(s)

transcription cis-regulatory region binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
core promoter sequence-specific DNA binding
intronic transcription regulatory region sequence-specific DNA binding
DNA-binding transcription activator activity, RNA polymerase II-specific
DNA binding
DNA-binding transcription factor activity
protein binding
enzyme binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P563276	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P097669	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	783237	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	96343	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P563276	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P097669	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P097669	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P563276	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P563276	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P097669	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P442931	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702134734	-	-
Agilent Rat cDNA Microarray (G4105A)	702134734	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10890086	-	-
Affymetrix Rat Gene 1.0 ST Array	10890085	-	-
Affymetrix Rat Gene 1.1 ST Array	10890084	-	-
Rat Genome 230 2.0 Array	1371010_PM_at	-	-
Rat Genome 230 2.0 Array	1371010_at	-	-
Affymetrix HT Rat Focus Array	1371010_at	-	-
Affymetrix HT Rat Focus Array	1371010_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0600017843.rn.1	TC0600002504.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017840.rn.1	TC0600002504.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017838.rn.1	TC0600002504.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017839.rn.1	TC0600002504.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017842.rn.1	TC0600002504.rn.1	RTA TC
Rat Expression Set 230	1371010_PM_at	-	-
Rat Expression Set 230	1371010_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10890084	-	-
Rat Genome U34 Set	X53858_at	-	-
Rat Genome U34 Set	D38035cds_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21387070	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359201	-	-