Rn01512905_m1 Best Coverage

• Gene Symbol: Clp1
• Gene Name: cleavage and polyadenylation factor I subunit 1
• Gene Aliases: Heab, RGD1307679
• Chromosome Location: Chr.3: 72125269 - 72129508 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Clp1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001009599.1	NP_001009599.1	2 - 3	704		72
	XM_006234461.2	XP_006234523.1	2 - 3	1239		72
	XM_006234462.1	XP_006234524.1	2 - 3	787		72
GenBank mRNA	BC087130.1	-	2 - 3	704	7112583	72
	FQ231160.1	-	2 - 3	732		72

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300003439.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Clp1

Panther Classification:

Molecular Function -

mRNA polyadenylation factor

Gene Ontology Categories:

Process(es)

mRNA polyadenylation
mRNA cleavage
tRNA splicing, via endonucleolytic cleavage and ligation
biological_process
phosphorylation
cerebellar cortex development
targeting of mRNA for destruction involved in RNA interference
siRNA loading onto RISC involved in RNA interference

Function(s)

molecular_function
ATP binding
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
polynucleotide 5'-hydroxyl-kinase activity
polydeoxyribonucleotide kinase activity
ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P514419	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	926511	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	620391	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	758415	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	123837	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P514419	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P514419	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P514419	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P22996	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P514419	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	89407	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10846847	-	-
Affymetrix Rat Gene 1.0 ST Array	10846848	-	-
Affymetrix Rat Gene 1.0 ST Array	10846849	-	-
Affymetrix Rat Gene 1.1 ST Array	10846846	-	-
Rat Genome 230 2.0 Array	1390118_at	-	-
Rat Genome 230 2.0 Array	1391893_PM_at	-	-
Rat Genome 230 2.0 Array	1390118_PM_at	-	-
Rat Genome 230 2.0 Array	1391893_at	-	-
Affymetrix HT Rat Focus Array	1391893_PM_at	-	-
Affymetrix HT Rat Focus Array	1390118_PM_at	-	-
Affymetrix HT Rat Focus Array	1391893_at	-	-
Affymetrix HT Rat Focus Array	1390118_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300027111.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027109.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027112.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027113.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027114.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027115.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027110.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027107.rn.1	TC0300003439.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300027119.rn.1	TC0300003439.rn.1	RTA TC
Rat Expression Set 230	1390118_PM_at	-	-
Rat Expression Set 230	1390118_at	-	-
Rat Expression Set 230	1391893_PM_at	-	-
Rat Expression Set 230	1391893_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10846846	-	-
Rat Genome U34 Set	rc_AI171213_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22131488	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1364136	-	-
RatRef-12 Expression BeadChip	ILMN_69638	-	-