Rn01515987_m1

• Gene Symbol: Hmgcl
• Gene Name: 3-hydroxymethyl-3-methylglutaryl-CoA lyase
• Gene Aliases: -
• Chromosome Location: Chr.5: 154294841 - 154308582 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hmgcl
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_024386.1	NP_077362.1	8 - 9	892		66
GenBank mRNA	BC061797.1	-	8 - 9	894	5598033	66
	FQ209616.1	-	8 - 9	896		66
	FQ234382.1	-	8 - 9	890		66
	Y10054.1	-	8 - 9	892		66

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001692.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hmgcl

Panther Classification:

Molecular Function -

lyase

Gene Ontology Categories:

Process(es)

liver development
acyl-CoA metabolic process
mitochondrion organization
response to nutrient
response to starvation
ketone body biosynthetic process
protein tetramerization
response to fatty acid

Function(s)

fatty-acyl-CoA binding
magnesium ion binding
hydroxymethylglutaryl-CoA lyase activity
receptor binding
manganese ion binding
carboxylic acid binding
protein homodimerization activity
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P527253	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	749076	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	828184	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	653992	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	756048	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	318476	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	1568	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	644218	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	786405	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	186062	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	172107	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P527253	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P527253	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P527253	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P527253	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67276	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	7070	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10872950	-	-
Affymetrix Rat Gene 1.0 ST Array	10872952	-	-
Affymetrix Rat Gene 1.0 ST Array	10872958	-	-
Affymetrix Rat Gene 1.0 ST Array	10872954	-	-
Affymetrix Rat Gene 1.0 ST Array	10872951	-	-
Affymetrix Rat Gene 1.0 ST Array	10872955	-	-
Affymetrix Rat Gene 1.0 ST Array	10872957	-	-
Affymetrix Rat Gene 1.0 ST Array	10872956	-	-
Affymetrix Rat Gene 1.0 ST Array	10872953	-	-
Affymetrix Rat Gene 1.1 ST Array	10872949	-	-
Rat Genome 230 2.0 Array	1367767_PM_at	-	-
Rat Genome 230 2.0 Array	1367767_at	-	-
Affymetrix HT Rat Focus Array	1367767_PM_at	-	-
Affymetrix HT Rat Focus Array	1367767_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500012306.rn.1	TC0500001692.rn.1	RTA TC
Rat Expression Set 230	1367767_at	-	-
Rat Expression Set 230	1367767_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10872949	-	-
Rat Genome U34 Set	rc_AI171090_at	-	-
Rat Genome U34 Set	rc_AI171090_g_at	-	-
Rat Genome U34 Set	rc_AA945052_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21338712	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371702	-	-
RatRef-12 Expression BeadChip	ILMN_56808	-	-