Rn01521829_m1 Best Coverage

• Gene Symbol: Prpf38b
• Gene Name: pre-mRNA processing factor 38B
• Gene Aliases: -
• Chromosome Location: Chr.2: 211706245 - 211715271 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Prpf38b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001024305.2	NP_001019476.1	4 - 5	832		68
	XM_006233172.1	XP_006233234.1	5 - 6	588		68
	XM_008761421.1	XP_008759643.1	4 - 5	883		68
GenBank mRNA	BC079264.1	-	4 - 5	781		68
	FQ210223.1	-	4 - 5	812		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200004483.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Prpf38b

Gene Ontology Categories:

Process(es)

mRNA processing
RNA splicing

Function(s)

RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P051154	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P831504	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	503811	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	661469	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	23093	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	462373	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	372936	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899688	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	43114	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P051154	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P831504	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P831504	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P051154	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P051154	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P831504	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	37799	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	82600	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67091	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10826133	-	-
Affymetrix Rat Gene 1.0 ST Array	10826135	-	-
Affymetrix Rat Gene 1.0 ST Array	10826132	-	-
Affymetrix Rat Gene 1.0 ST Array	10826134	-	-
Affymetrix Rat Gene 1.0 ST Array	10826131	-	-
Affymetrix Rat Gene 1.0 ST Array	10826136	-	-
Affymetrix Rat Gene 1.1 ST Array	10826130	-	-
Rat Genome 230 2.0 Array	1374500_PM_at	-	-
Rat Genome 230 2.0 Array	1385455_at	-	-
Rat Genome 230 2.0 Array	1385455_PM_at	-	-
Rat Genome 230 2.0 Array	1379691_at	-	-
Rat Genome 230 2.0 Array	1379691_PM_at	-	-
Rat Genome 230 2.0 Array	1374500_at	-	-
Affymetrix HT Rat Focus Array	1379691_at	-	-
Affymetrix HT Rat Focus Array	1385455_at	-	-
Affymetrix HT Rat Focus Array	1385455_PM_at	-	-
Affymetrix HT Rat Focus Array	1374500_PM_at	-	-
Affymetrix HT Rat Focus Array	1374500_at	-	-
Affymetrix HT Rat Focus Array	1379691_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200031246.rn.1	TC0200004483.rn.1	RTA TC
Rat Expression Set 230	1374500_PM_at	-	-
Rat Expression Set 230	1374500_at	-	-
Rat Expression Set 230	1379691_at	-	-
Rat Expression Set 230	1385455_PM_at	-	-
Rat Expression Set 230	1385455_at	-	-
Rat Expression Set 230	1379691_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10826130	-	-
Rat Genome U34 Set	rc_AI011571_at	-	-
Rat Genome U34 Set	rc_AI237090_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20761452	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359746	-	-