Rn01525071_m1 Best Coverage

• Gene Symbol: Tfe3
• Gene Name: transcription factor binding to IGHM enhancer 3
• Gene Aliases: RGD1559642, Tcfe3
• Chromosome Location: Chr.X: 15574579 - 15587807 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tfe3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271227.1	NP_001258156.1	6 - 7	1277		80
	XM_006256721.2	XP_006256783.1	6 - 7	1922		80
	XM_006256722.1	XP_006256784.1	5 - 6	1167		80
	XM_006256723.2	XP_006256785.1	6 - 7	1243		80
	XM_006256725.2	XP_006256787.1	6 - 7	936		80
	XM_006256726.2	XP_006256788.1	6 - 7	886		80
	XM_006256727.2	XP_006256789.1	6 - 7	1286		80
	XM_006256728.2	XP_006256790.1	6 - 7	955		80
	XM_006256729.2	XP_006256791.1	6 - 7	906		80

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00001501.rn.1

• Set Membership: Amplicon length between 71 and 85, Recommended Assay, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
humoral immune response
biological_process
regulation of osteoclast differentiation
positive regulation of cell adhesion
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
protein dimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0X00009576.rn.1	TC0X00001501.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00009577.rn.1	TC0X00001501.rn.1	RTA TC