Rn01525073_m1

• Gene Symbol: Tfe3
• Gene Name: transcription factor binding to IGHM enhancer 3
• Gene Aliases: RGD1559642, Tcfe3
• Chromosome Location: Chr.X: 15574579 - 15587807 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tfe3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271227.1	NP_001258156.1	9 - 10	1561		157
	XM_006256721.2	XP_006256783.1	9 - 10	2206		157
	XM_006256722.1	XP_006256784.1	8 - 9	1451		157
	XM_006256723.2	XP_006256785.1	9 - 10	1527		157
	XM_006256725.2	XP_006256787.1	9 - 10	1220		157
	XM_006256726.2	XP_006256788.1	9 - 10	1170		157
	XM_006256727.2	XP_006256789.1	9 - 10	1570		157
	XM_006256728.2	XP_006256790.1	9 - 10	1239		157
	XM_006256729.2	XP_006256791.1	9 - 10	1190		157

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00001501.rn.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
humoral immune response
biological_process
regulation of osteoclast differentiation
positive regulation of cell adhesion
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
protein dimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P148673	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P166749	-	-

Array Name	Probe IDs	Targets	Target Type
Rat Genome 230 2.0 Array	1378919_at	-	-
Rat Genome 230 2.0 Array	1388967_PM_at	-	-
Rat Genome 230 2.0 Array	1389985_PM_at	-	-
Rat Genome 230 2.0 Array	1389985_at	-	-
Rat Genome 230 2.0 Array	1378919_PM_at	-	-
Rat Genome 230 2.0 Array	1388967_at	-	-
Affymetrix HT Rat Focus Array	1388967_PM_at	-	-
Affymetrix HT Rat Focus Array	1388967_at	-	-
Affymetrix HT Rat Focus Array	1389985_at	-	-
Affymetrix HT Rat Focus Array	1389985_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0X00009573.rn.1	TC0X00001501.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00009574.rn.1	TC0X00001501.rn.1	RTA TC
Rat Expression Set 230	1388967_PM_at	-	-
Rat Expression Set 230	1389985_PM_at	-	-
Rat Expression Set 230	1388967_at	-	-
Rat Expression Set 230	1389985_at	-	-
Rat Expression Set 230	1378919_PM_at	-	-
Rat Expression Set 230	1378919_at	-	-
Rat Genome U34 Set	rc_AI012945_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21571755	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373582	-	-
RatRef-12 Expression BeadChip	ILMN_62899	-	-