Rn01525789_g1

• Gene Symbol: Ddx39b
• Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
• Gene Aliases: Bat1, Bat1a, p47
• Chromosome Location: Chr.20: 4806103 - 4818596 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ddx39b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_133300.3	NP_579834.2	9 - 10	1315		63
GenBank mRNA	BC080243.1	-	9 - 10	1264		63
	FQ212901.1	-	9 - 10	1301		63
	M75168.1	-	8 - 9	1220		63

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001083.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ddx39b

Gene Ontology Categories:

Process(es)

spliceosomal complex assembly
mRNA splicing, via spliceosome
mRNA export from nucleus
RNA splicing
RNA secondary structure unwinding
positive regulation of DNA-templated transcription, elongation
viral mRNA export from host cell nucleus
negative regulation of DNA damage checkpoint

Function(s)

RNA binding
RNA helicase activity
ATP binding
ATP-dependent activity, acting on RNA
U6 snRNA binding
U4 snRNA binding
ATP-dependent protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P445195	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P445195	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P445195	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P445195	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P445195	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10831146	-	-
Affymetrix Rat Gene 1.0 ST Array	10831137	-	-
Affymetrix Rat Gene 1.0 ST Array	10831142	-	-
Affymetrix Rat Gene 1.0 ST Array	10831145	-	-
Affymetrix Rat Gene 1.0 ST Array	10831144	-	-
Affymetrix Rat Gene 1.0 ST Array	10831139	-	-
Affymetrix Rat Gene 1.0 ST Array	10831147	-	-
Affymetrix Rat Gene 1.0 ST Array	10831138	-	-
Affymetrix Rat Gene 1.0 ST Array	10831140	-	-
Affymetrix Rat Gene 1.0 ST Array	10831143	-	-
Affymetrix Rat Gene 1.0 ST Array	10831136	-	-
Affymetrix Rat Gene 1.1 ST Array	10831135	-	-
Rat Genome 230 2.0 Array	1388158_at	-	-
Rat Genome 230 2.0 Array	1375850_PM_at	-	-
Rat Genome 230 2.0 Array	1390100_PM_s_at	-	-
Rat Genome 230 2.0 Array	1375850_at	-	-
Rat Genome 230 2.0 Array	1388158_PM_at	-	-
Rat Genome 230 2.0 Array	1390100_s_at	-	-
Affymetrix HT Rat Focus Array	1388158_PM_at	-	-
Affymetrix HT Rat Focus Array	1388158_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000009065.rn.1	TC2000001083.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009066.rn.1	TC2000001083.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009064.rn.1	TC2000001083.rn.1	RTA TC
Rat Expression Set 230	1388158_PM_at	-	-
Rat Expression Set 230	1388158_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10831135	-	-
Rat Genome U34 Set	M75168_at	-	-
Rat Genome U34 Set	rc_AA892014_i_at	-	-
Rat Genome U34 Set	rc_AA892014_s_at	-	-
Rat Genome U34 Set	rc_AA892014_r_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22380820	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363985	-	-
RatRef-12 Expression BeadChip	ILMN_48438	-	-