Rn01525860_g1

Gene Symbol:

Tnf LOC103694380

Gene Name:

tumor necrosis factor

tumor necrosis factor

Gene Aliases:

RATTNF, TNF-alpha, Tnfa

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Chromosome Location:

Chr.20: 5189382 - 5192000 on Build Rnor_6.0

Chromosome Location:

Chr.20: 4855818 - 4858447 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: Tnf
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012675.3	NP_036807.1	2 - 3	384		95
GenBank mRNA	AF269159.1	-	2 - 3	240		95
	AF269160.1	-	2 - 3	240		95
	AJ002278.1	-	2 - 3	240		95
	BC107671.1	-	2 - 3	384	7938033	95
	X66539.1	-	2 - 3	240		95

Gene Symbol: LOC103694380
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008772775.1	XP_008770997.1	2 - 3	395		95

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect transcript(s) from off target gene(s). Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Apoptosis, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tnf
Click here to find siRNAs for Gene LOC103694380

Gene Ontology Categories:

Process(es)

protein import into nucleus, translocation
negative regulation of transcription from RNA polymerase II promoter
MAPK cascade
activation of MAPKKK activity
activation of MAPK activity
response to hypoxia
cell activation
positive regulation of cytokine production
regulation of protein phosphorylation
positive regulation of protein phosphorylation
negative regulation of L-glutamate transport
chronic inflammatory response to antigenic stimulus
negative regulation of cytokine secretion involved in immune response
positive regulation of chronic inflammatory response to antigenic stimulus
positive regulation of humoral immune response mediated by circulating immunoglobulin
skeletal muscle contraction
glucose metabolic process
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
obsolete transformed cell apoptotic process
defense response
inflammatory response
humoral immune response
signal transduction
JNK cascade
multicellular organism development
negative regulation of cell proliferation
extrinsic apoptotic signaling pathway via death domain receptors
intrinsic apoptotic signaling pathway in response to DNA damage
response to radiation
response to mechanical stimulus
response to virus
organ morphogenesis
positive regulation of gene expression
negative regulation of gene expression
negative regulation of alkaline phosphatase activity
response to activity
calcium-mediated signaling
extracellular matrix organization
osteoclast differentiation
sequestering of triglyceride
positive regulation of protein complex assembly
positive regulation of fever generation
lipopolysaccharide-mediated signaling pathway
response to lipopolysaccharide
negative regulation of interleukin-6 production
positive regulation of chemokine production
positive regulation of interferon-gamma production
positive regulation of interleukin-18 production
positive regulation of interleukin-6 production
receptor biosynthetic process
positive regulation of peptidyl-serine phosphorylation
tumor necrosis factor-mediated signaling pathway
positive regulation of heterotypic cell-cell adhesion
regulation of cell proliferation
positive regulation of NF-kappaB import into nucleus
response to drug
defense response to bacterium
positive regulation of apoptotic process
positive regulation of programmed cell death
regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of I-kappaB kinase/NF-kappaB signaling
negative regulation of protein complex disassembly
positive regulation of protein complex disassembly
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of MAP kinase activity
protein kinase B signaling
positive regulation of JUN kinase activity
positive regulation of neuron apoptotic process
negative regulation of growth of symbiont in host
negative regulation of viral genome replication
positive regulation of chemokine biosynthetic process
cellular extravasation
positive regulation of interleukin-8 biosynthetic process
positive regulation of nitric oxide biosynthetic process
negative regulation of myoblast differentiation
negative regulation of osteoblast differentiation
regulation of osteoclast differentiation
positive regulation of osteoclast differentiation
positive regulation of action potential
positive regulation of mitotic nuclear division
positive regulation of protein kinase activity
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of translational initiation by iron
negative regulation of glucose import
positive regulation of JNK cascade
embryonic digestive tract development
positive regulation of smooth muscle cell proliferation
regulation of protein secretion
positive regulation of cytokine secretion
positive regulation of inflammatory response
positive regulation of phagocytosis
regulation of insulin secretion
positive regulation of synaptic transmission
defense response to Gram-positive bacterium
leukocyte migration
leukocyte tethering or rolling
detection of mechanical stimulus involved in sensory perception of pain
negative regulation of lipid catabolic process
regulation of immunoglobulin secretion
positive regulation of membrane protein ectodomain proteolysis
positive regulation of sequence-specific DNA binding transcription factor activity
positive regulation of NF-kappaB transcription factor activity
positive regulation of protein transport
response to glucocorticoid
positive regulation of NFAT protein import into nucleus
positive regulation of hair follicle development
positive regulation of protein kinase B signaling
positive regulation of vitamin D biosynthetic process
positive regulation of calcidiol 1-monooxygenase activity
epithelial cell proliferation involved in salivary gland morphogenesis
regulation of branching involved in salivary gland morphogenesis
negative regulation of branching involved in lung morphogenesis
cellular response to lipopolysaccharide
cellular response to amino acid stimulus
cellular response to nicotine
cellular response to organic cyclic compound
positive regulation of podosome assembly
apoptotic signaling pathway
extrinsic apoptotic signaling pathway
necroptotic signaling pathway
response to gold nanoparticle
positive regulation of protein localization to cell surface
positive regulation of chemokine (C-X-C motif) ligand 2 production
regulation of reactive oxygen species metabolic process
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

protease binding
cytokine activity
tumor necrosis factor receptor binding
identical protein binding
transcription regulatory region DNA binding