Rn01525985_m1 Best Coverage

• Gene Symbol: Rnf5
• Gene Name: ring finger protein 5, E3 ubiquitin protein ligase
• Gene Aliases: -
• Chromosome Location: Chr.20: 4366244 - 4368690 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rnf5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109025.2	NP_001102495.1	1 - 2	242		114
GenBank mRNA	BC088341.1	-	1 - 2	218	7367801	114
	DY573537.1	-	1 - 2	242		114

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001070.rn.1

• Set Membership: Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

response to bacterium
negative regulation of autophagy
protein ubiquitination
protein destabilization
cellular protein catabolic process
protein K63-linked ubiquitination
protein K48-linked ubiquitination
ER-associated misfolded protein catabolic process
regulation of autophagosome assembly

Function(s)

ubiquitin-protein transferase activity
zinc ion binding
ligase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P753198	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P753198	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P753198	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P753198	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10828318	-	-
Affymetrix Rat Gene 1.0 ST Array	10828319	-	-
Affymetrix Rat Gene 1.0 ST Array	10828321	-	-
Affymetrix Rat Gene 1.0 ST Array	10828320	-	-
Affymetrix Rat Gene 1.0 ST Array	10828317	-	-
Affymetrix Rat Gene 1.1 ST Array	10828316	-	-
Rat Genome 230 2.0 Array	1371401_at	-	-
Rat Genome 230 2.0 Array	1371401_PM_at	-	-
Affymetrix HT Rat Focus Array	1371401_PM_at	-	-
Affymetrix HT Rat Focus Array	1371401_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000008766.rn.1	TC2000001070.rn.1	RTA TC
Rat Expression Set 230	1371401_at	-	-
Rat Expression Set 230	1371401_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10828316	-	-
Rat Genome U34 Set	rc_AA851777_at	-	-