Rn01528281_g1

Gene Symbol:

LOC103689963 Hdac6

Gene Name:

histone deacetylase 6

histone deacetylase 6

Gene Aliases:

-

-

Chromosome Location:

Chr.X: 15295388 - 15316673 on Build Rnor_6.0

Chromosome Location:

Chr.X: 15396201 - 15417486 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: LOC103689963
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_006256755.2	XP_006256817.1	28 - 29	3682		60
	XM_006256756.2	XP_006256818.1	28 - 29	3476		60
	XM_228753.8	XP_228753.4	28 - 29	3607		60

Gene Symbol: Hdac6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_003752010.3	XP_003752058.1		3607		60
	XM_006256758.2	XP_006256820.1		3682		60
	XM_006256759.2	XP_006256821.1		3476		60

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

protein polyubiquitination
regulation of protein phosphorylation
response to amphetamine
protein deacetylation
ubiquitin-dependent protein catabolic process
misfolded or incompletely synthesized protein catabolic process
intracellular protein transport
negative regulation of microtubule depolymerization
metabolic process
positive regulation of cell proliferation
response to toxic substance
positive regulation of signal transduction
response to organic substance
regulation of receptor activity
positive regulation of epithelial cell migration
regulation of mitochondrion organization
positive regulation of receptor biosynthetic process
negative regulation of neuron projection development
macroautophagy
histone deacetylation
axonal transport of mitochondrion
neuron differentiation
lysosome localization
cellular response to oxidative stress
peptidyl-lysine deacetylation
response to immobilization stress
cellular response to topologically incorrect protein
regulation of gene expression, epigenetic
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
protein complex disassembly
negative regulation of protein complex disassembly
regulation of fat cell differentiation
negative regulation of proteolysis
negative regulation of axon extension involved in axon guidance
positive regulation of dendrite morphogenesis
response to corticosterone
response to misfolded protein
positive regulation of synaptic transmission, glutamatergic
regulation of establishment of protein localization
cellular response to hydrogen peroxide
regulation of microtubule cytoskeleton organization
aggresome assembly
polyubiquitinated misfolded protein transport
Hsp90 deacetylation
response to growth factor
cellular response to misfolded protein
cellular response to parathyroid hormone stimulus
response to dexamethasone
positive regulation of chaperone-mediated protein complex assembly
tubulin deacetylation
positive regulation of tubulin deacetylation
positive regulation of hydrogen peroxide-mediated programmed cell death
negative regulation of protein acetylation
positive regulation of oxidative stress-induced neuron death

Function(s)

core promoter binding
histone deacetylase activity
protein binding
beta-catenin binding
microtubule binding
zinc ion binding
hydrolase activity
polyubiquitin binding
ubiquitin protein ligase binding
histone deacetylase binding
tubulin deacetylase activity
alpha-tubulin binding
ubiquitin binding
tau protein binding
beta-tubulin binding
misfolded protein binding
Hsp90 protein binding
dynein complex binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P180060	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P180060	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P180060	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P180060	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P180060	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10932501	-	-
Affymetrix Rat Gene 1.0 ST Array	10932502	-	-
Affymetrix Rat Gene 1.0 ST Array	10932500	-	-
Affymetrix Rat Gene 1.1 ST Array	10932475	-	-
Rat Genome 230 2.0 Array	1372592_at	-	-
Rat Genome 230 2.0 Array	1372592_PM_at	-	-
Affymetrix HT Rat Focus Array	1372592_PM_at	-	-
Affymetrix HT Rat Focus Array	1372592_at	-	-
Rat Expression Set 230	1372592_PM_at	-	-
Rat Expression Set 230	1372592_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10932475	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21961767	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359156	-	-
RatRef-12 Expression BeadChip	ILMN_62268	-	-