Rn01528452_g1 Best Coverage

• Gene Symbol: Zkscan3
• Gene Name: zinc finger with KRAB and SCAN domains 3
• Gene Aliases: Zfp307
• Chromosome Location: Chr.17: 45247733 - 45263422 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Zkscan3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001012053.2	NP_001012053.2	4 - 5	716		136
	XM_006254096.2	XP_006254158.1	5 - 6	1546		136
	XM_006254099.2	XP_006254161.1	4 - 5	1043		136
	XM_006254101.2	XP_006254163.1	5 - 6	840		136
	XM_008771720.1	XP_008769942.1	4 - 5	6118		136
	XM_008771721.1	XP_008769943.1	4 - 5	6301		136
	XM_008771723.1	XP_008769945.1	5 - 6	6044		136
	XM_008771724.1	XP_008769946.1	5 - 6	5926		136
	XM_008771725.1	XP_008769947.1	5 - 6	6109		136
	XM_008771726.1	XP_008769948.1	5 - 6	1023		136
GenBank mRNA	BC089847.1	-	4 - 5	719	7373658	136

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000694.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Zkscan3

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
regulation of transcription, DNA-templated
lysosome organization
negative regulation of autophagy
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
negative regulation of cellular senescence

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
nucleic acid binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
sequence-specific DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P094781	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P163131	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	711769	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	655846	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	120589	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	734530	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	723668	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	632833	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	272556	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	126050	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	26741	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	390330	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	419188	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	179562	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	114629	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P163131	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P094781	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P094781	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P163131	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P163131	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P094781	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P163131	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P636608	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	103946	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	76089	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10795341	-	-
Affymetrix Rat Gene 1.0 ST Array	10795338	-	-
Affymetrix Rat Gene 1.0 ST Array	10795336	-	-
Affymetrix Rat Gene 1.0 ST Array	10795337	-	-
Affymetrix Rat Gene 1.0 ST Array	10795343	-	-
Affymetrix Rat Gene 1.0 ST Array	10795340	-	-
Affymetrix Rat Gene 1.0 ST Array	10795339	-	-
Affymetrix Rat Gene 1.0 ST Array	10795342	-	-
Affymetrix Rat Gene 1.1 ST Array	10795335	-	-
Rat Genome 230 2.0 Array	1398573_at	-	-
Rat Genome 230 2.0 Array	1398573_PM_at	-	-
Rat Genome 230 2.0 Array	1382744_PM_at	-	-
Rat Genome 230 2.0 Array	1382744_at	-	-
Affymetrix HT Rat Focus Array	1398573_at	-	-
Affymetrix HT Rat Focus Array	1382744_PM_at	-	-
Affymetrix HT Rat Focus Array	1382744_at	-	-
Affymetrix HT Rat Focus Array	1398573_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700004742.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004743.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004738.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004739.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004745.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004744.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004740.rn.1	TC1700000694.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700004741.rn.1	TC1700000694.rn.1	RTA TC
Rat Expression Set 230	1382744_at	-	-
Rat Expression Set 230	1398573_PM_at	-	-
Rat Expression Set 230	1398573_at	-	-
Rat Expression Set 230	1382744_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10795335	-	-
Rat Genome U34 Set	rc_AI175753_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21302572	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375333	-	-