Rn01528873_m1 Best Coverage

• Gene Symbol: Vapb
• Gene Name: VAMP (vesicle-associated membrane protein)-associated protein B and C
• Gene Aliases: -
• Chromosome Location: Chr.3: 171832558 - 171870198 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vapb
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_021847.3	NP_068619.1	5 - 6	575		128
	XM_006235706.2	XP_006235768.2	5 - 6	749		128
GenBank mRNA	AF086631.1	-	5 - 6	575		128
	BC065576.1	-	5 - 6	760	5598396	128

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002505.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vapb

Panther Classification:

Molecular Function -

membrane traffic protein, membrane trafficking regulatory protein

Gene Ontology Categories:

Process(es)

cellular calcium ion homeostasis
ER to Golgi vesicle-mediated transport
activation of signaling protein activity involved in unfolded protein response
endoplasmic reticulum organization
biological_process
modulation by virus of host morphology or physiology
endoplasmic reticulum unfolded protein response
negative regulation by host of viral release from host cell
positive regulation by host of viral release from host cell
negative regulation by host of viral genome replication
positive regulation by host of viral genome replication
positive regulation of viral genome replication
negative regulation by virus of viral protein levels in host cell
COPII-coated vesicle budding

Function(s)

molecular_function
microtubule binding
enzyme binding
FFAT motif binding
protein homodimerization activity
protein heterodimerization activity
beta-tubulin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P545129	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P117408	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48067	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	260724	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	287559	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	53840	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	16578	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	440768	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	662575	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	554766	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	98368	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	775043	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	404198	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	546217	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	392036	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	46058	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	325839	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	107806	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	563054	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	239259	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	302825	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	925854	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	201981	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	113842	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	850886	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	18030	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	152057	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	6060	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	21893	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P117408	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P117408	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P117408	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P492843	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700529157	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	13963	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	83573	-	-
Agilent Rat cDNA Microarray (G4105A)	700529157	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10842628	-	-
Affymetrix Rat Gene 1.0 ST Array	10842626	-	-
Affymetrix Rat Gene 1.0 ST Array	10842629	-	-
Affymetrix Rat Gene 1.0 ST Array	10842630	-	-
Affymetrix Rat Gene 1.0 ST Array	10842627	-	-
Affymetrix Rat Gene 1.0 ST Array	10842632	-	-
Affymetrix Rat Gene 1.0 ST Array	10842631	-	-
Affymetrix Rat Gene 1.0 ST Array	10842625	-	-
Affymetrix Rat Gene 1.1 ST Array	10842624	-	-
Rat Genome 230 2.0 Array	1369597_PM_at	-	-
Rat Genome 230 2.0 Array	1390257_at	-	-
Rat Genome 230 2.0 Array	1390257_PM_at	-	-
Rat Genome 230 2.0 Array	1369597_at	-	-
Affymetrix HT Rat Focus Array	1390257_PM_at	-	-
Affymetrix HT Rat Focus Array	1369597_at	-	-
Affymetrix HT Rat Focus Array	1369597_PM_at	-	-
Affymetrix HT Rat Focus Array	1390257_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300018486.rn.1	TC0300002505.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300018487.rn.1	TC0300002505.rn.1	RTA TC
Rat Expression Set 230	1369597_at	-	-
Rat Expression Set 230	1390257_at	-	-
Rat Expression Set 230	1390257_PM_at	-	-
Rat Expression Set 230	1369597_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10842624	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22148950	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1366698	-	-
RatRef-12 Expression BeadChip	ILMN_60859	-	-