Rn01529709_m1 Best Coverage

• Gene Symbol: Abcd1
• Gene Name: ATP-binding cassette, subfamily D (ALD), member 1
• Gene Aliases: RGD1562128
• Chromosome Location: Chr.X: 157074117 - 157095511 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Abcd1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108821.1	NP_001102291.1	4 - 5	1828		75

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00002648.rn.1

• Set Membership: Amplicon length between 71 and 85, Transporter, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

ATP-binding cassette (ABC) transporter

Gene Ontology Categories:

Process(es)

fatty acid beta-oxidation
peroxisome organization
peroxisomal long-chain fatty acid import
long-chain fatty acid catabolic process
very long-chain fatty acid catabolic process
transmembrane transport

Function(s)

peroxisomal fatty-acyl-CoA transporter activity
protein binding
ATP binding
ATPase activity
enzyme binding
ATPase activity, coupled to transmembrane movement of substances
identical protein binding
protein homodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P133973	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	268150	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	158122	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	617879	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	195616	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	887463	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167054	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	474962	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	892730	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	840629	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	833832	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	755647	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	443612	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	155504	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	907034	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	315392	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	452592	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	949102	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6067	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	27017	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	160019	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	167014	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P133973	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P133973	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P133973	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P18970	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	44368	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10935950	-	-
Affymetrix Rat Gene 1.0 ST Array	10935953	-	-
Affymetrix Rat Gene 1.0 ST Array	10935958	-	-
Affymetrix Rat Gene 1.0 ST Array	10935951	-	-
Affymetrix Rat Gene 1.0 ST Array	10935952	-	-
Affymetrix Rat Gene 1.0 ST Array	10935959	-	-
Affymetrix Rat Gene 1.0 ST Array	10935955	-	-
Affymetrix Rat Gene 1.0 ST Array	10935954	-	-
Affymetrix Rat Gene 1.0 ST Array	10935957	-	-
Affymetrix Rat Gene 1.0 ST Array	10935956	-	-
Affymetrix Rat Gene 1.1 ST Array	10935949	-	-
Rat Genome 230 2.0 Array	1376140_PM_at	-	-
Rat Genome 230 2.0 Array	1376140_at	-	-
Affymetrix HT Rat Focus Array	1376140_at	-	-
Affymetrix HT Rat Focus Array	1376140_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0X00016570.rn.1	TC0X00002648.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00016572.rn.1	TC0X00002648.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00016571.rn.1	TC0X00002648.rn.1	RTA TC
Rat Expression Set 230	1376140_at	-	-
Rat Expression Set 230	1376140_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10935949	-	-
Rat Genome U34 Set	rc_AI170676_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21382317	-	-