Rn01533350_m1 Best Coverage

• Gene Symbol: Rarg
• Gene Name: retinoic acid receptor, gamma
• Gene Aliases: -
• Chromosome Location: Chr.7: 143840739 - 143863206 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rarg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001135249.1	NP_001128721.1	5 - 6	965		80
	NM_001135250.1	NP_001128722.1	3 - 4	737		80
	XM_008765784.1	XP_008764006.1	4 - 5	938		80
	XM_008765785.1	XP_008764007.1	5 - 6	929		80
	XM_008765786.1	XP_008764008.1	4 - 5	1457		80

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700003968.rn.1

• Set Membership: Amplicon length between 71 and 85, Nuclear Receptor, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
neural tube closure
chondrocyte development
glandular epithelial cell development
retinal pigment epithelium development
growth plate cartilage development
growth plate cartilage chondrocyte growth
transcription, DNA-templated
regulation of transcription, DNA-templated
positive regulation of cell proliferation
negative regulation of cell proliferation
anterior/posterior pattern specification
regulation of gene expression
positive regulation of gene expression
embryonic camera-type eye development
regulation of myelination
negative regulation of chondrocyte differentiation
response to retinoic acid
embryonic hindlimb morphogenesis
multicellular organism growth
camera-type eye development
positive regulation of apoptotic process
negative regulation of apoptotic process
positive regulation of programmed cell death
steroid hormone mediated signaling pathway
negative regulation of cell differentiation
regulation of myeloid cell differentiation
positive regulation of transcription from RNA polymerase II promoter
embryonic eye morphogenesis
retinoic acid receptor signaling pathway
reproductive structure development
gland development
retina development in camera-type eye
limb development
face development
bone development
bone morphogenesis
epithelium development
trachea cartilage development
prostate gland epithelium morphogenesis
negative regulation of cartilage development
Harderian gland development
cellular response to retinoic acid

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
retinoic acid receptor activity
zinc ion binding
sequence-specific DNA binding
retinoid X receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P16284	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P119572	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	859124	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	512798	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	456003	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	894269	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	7555	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	763425	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	99606	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	788317	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	827650	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	751629	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	59317	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	28983	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	54390	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	794619	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	2264	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	914020	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	131470	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	46655	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	161009	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P16284	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P119572	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P119572	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P16284	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P16284	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P119572	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10907581	-	-
Affymetrix Rat Gene 1.0 ST Array	10907582	-	-
Affymetrix Rat Gene 1.0 ST Array	10907577	-	-
Affymetrix Rat Gene 1.0 ST Array	10907580	-	-
Affymetrix Rat Gene 1.0 ST Array	10907575	-	-
Affymetrix Rat Gene 1.0 ST Array	10907583	-	-
Affymetrix Rat Gene 1.0 ST Array	10907579	-	-
Affymetrix Rat Gene 1.0 ST Array	10907584	-	-
Affymetrix Rat Gene 1.0 ST Array	10907576	-	-
Affymetrix Rat Gene 1.0 ST Array	10907578	-	-
Affymetrix Rat Gene 1.1 ST Array	10907574	-	-
Rat Genome 230 2.0 Array	1376023_PM_at	-	-
Rat Genome 230 2.0 Array	1390771_PM_at	-	-
Rat Genome 230 2.0 Array	1390771_at	-	-
Rat Genome 230 2.0 Array	1376023_at	-	-
Affymetrix HT Rat Focus Array	1390771_at	-	-
Affymetrix HT Rat Focus Array	1390771_PM_at	-	-
Affymetrix HT Rat Focus Array	1376023_PM_at	-	-
Affymetrix HT Rat Focus Array	1376023_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700032083.rn.1	TC0700003968.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032088.rn.1	TC0700003968.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032082.rn.1	TC0700003968.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032085.rn.1	TC0700003968.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032089.rn.1	TC0700003968.rn.1	RTA TC
Rat Expression Set 230	1376023_at	-	-
Rat Expression Set 230	1376023_PM_at	-	-
Rat Expression Set 230	1390771_PM_at	-	-
Rat Expression Set 230	1390771_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10907574	-	-
Rat Genome U34 Set	rc_AI010567_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22021792	-	-