Rn01533406_g1

Gene Symbol:

Setdb1 LOC100363520

Gene Name:

SET domain, bifurcated 1

mCG16729-like

Gene Aliases:

-

-

Chromosome Location:

Chr.2: 196495867 - 196527412 on Build Rnor_6.0

Chromosome Location:

Chr.2: 196587061 - 196590834 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Setdb1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271175.1	NP_001258104.1	1 - 2	100		110
GenBank mRNA	DN937937.1	-	1 - 2	128		110

Gene Symbol: LOC100363520
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_006232941.2	XP_006233003.1	1 - 2	364		110
	XM_008761342.1	XP_008759564.1	1 - 2	364		110

More Information

Additional Information:

This assay is in the 5'UTR region of the NM_001271175.1 transcripts.

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
inner cell mass cell proliferation
response to vitamin
histone H3-K9 trimethylation
response to ethanol
bone development

Function(s)

molecular_function
DNA binding
zinc ion binding
histone-lysine N-methyltransferase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079945	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079945	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P079945	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0200028840.rn.1	TC0200004210.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200028843.rn.1	TC0200004210.rn.1	RTA TC