Rn01533891_g1 Best Coverage

• Gene Symbol: Txnip
• Gene Name: thioredoxin interacting protein
• Gene Aliases: Vdup1
• Chromosome Location: Chr.2: 198683168 - 198686971 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Txnip
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008767.1	NP_001008767.1	7 - 8	1333		71
GenBank mRNA	BC088411.1	-	7 - 8	1333	7192327	71
	U30789.1	-	7 - 8	2118		71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200001766.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Txnip

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
protein import into nucleus
response to oxidative stress
response to mechanical stimulus
response to glucose
keratinocyte differentiation
response to estradiol
response to progesterone
regulation of cell proliferation
response to drug
response to hydrogen peroxide
positive regulation of apoptotic process
negative regulation of catalytic activity
platelet-derived growth factor receptor signaling pathway
response to calcium ion
negative regulation of cell division
cellular response to tumor cell

Function(s)

molecular_function
enzyme inhibitor activity
ubiquitin protein ligase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P237621	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	209004	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	752543	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	383251	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	96047	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P237621	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P237621	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P237621	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P237621	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702205858	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700463451	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	11168	-	-
Agilent Rat cDNA Microarray (G4105A)	702205858	-	-
Agilent Rat cDNA Microarray (G4105A)	700463451	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10817557	-	-
Affymetrix Rat Gene 1.0 ST Array	10817555	-	-
Affymetrix Rat Gene 1.0 ST Array	10817556	-	-
Affymetrix Rat Gene 1.0 ST Array	10817554	-	-
Affymetrix Rat Gene 1.0 ST Array	10817558	-	-
Affymetrix Rat Gene 1.0 ST Array	10817560	-	-
Affymetrix Rat Gene 1.0 ST Array	10817553	-	-
Affymetrix Rat Gene 1.0 ST Array	10817559	-	-
Affymetrix Rat Gene 1.1 ST Array	10817552	-	-
Rat Genome 230 2.0 Array	1371131_PM_a_at	-	-
Rat Genome 230 2.0 Array	1371131_a_at	-	-
Affymetrix HT Rat Focus Array	1371131_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1371131_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200011941.rn.1	TC0200001766.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200011940.rn.1	TC0200001766.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200011942.rn.1	TC0200001766.rn.1	RTA TC
Rat Expression Set 230	1371131_a_at	-	-
Rat Expression Set 230	1371131_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10817552	-	-
Rat Genome U34 Set	rc_AI237654_at	-	-
Rat Genome U34 Set	rc_AI014169_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21405412	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359696	-	-
RatRef-12 Expression BeadChip	ILMN_57557	-	-