Rn01534170_g1 Best Coverage

• Gene Symbol: Ecm1
• Gene Name: extracellular matrix protein 1
• Gene Aliases: -
• Chromosome Location: Chr.2: 197855468 - 197860970 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ecm1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053882.1	NP_446334.1	10 - 11	1564		74
	XM_006232942.2	XP_006233004.1	10 - 11	1896		74
GenBank mRNA	BC085879.1	-	10 - 11	1564	7191762	74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200004216.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ecm1

Gene Ontology Categories:

Process(es)

ossification
angiogenesis
positive regulation of endothelial cell proliferation
negative regulation of cytokine-mediated signaling pathway
regulation of type 2 immune response
regulation of transcription from RNA polymerase II promoter
inflammatory response
signal transduction
biological_process
negative regulation of peptidase activity
negative regulation of bone mineralization
biomineral tissue development
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of angiogenesis
regulation of T cell migration

Function(s)

protease binding
molecular_function
signal transducer activity
interleukin-2 receptor binding
protein C-terminus binding
enzyme binding
laminin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P1050480	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	183376	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	66866	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	770337	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	27951	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1050480	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1050480	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P1050480	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P342051	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1050480	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	72024	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10825032	-	-
Affymetrix Rat Gene 1.0 ST Array	10825031	-	-
Affymetrix Rat Gene 1.0 ST Array	10825035	-	-
Affymetrix Rat Gene 1.0 ST Array	10825029	-	-
Affymetrix Rat Gene 1.0 ST Array	10825030	-	-
Affymetrix Rat Gene 1.0 ST Array	10825033	-	-
Affymetrix Rat Gene 1.0 ST Array	10825025	-	-
Affymetrix Rat Gene 1.0 ST Array	10825027	-	-
Affymetrix Rat Gene 1.0 ST Array	10825023	-	-
Affymetrix Rat Gene 1.0 ST Array	10825028	-	-
Affymetrix Rat Gene 1.0 ST Array	10825026	-	-
Affymetrix Rat Gene 1.0 ST Array	10825034	-	-
Affymetrix Rat Gene 1.0 ST Array	10825024	-	-
Affymetrix Rat Gene 1.1 ST Array	10825022	-	-
Rat Genome 230 2.0 Array	1388698_PM_at	-	-
Rat Genome 230 2.0 Array	1388698_at	-	-
Affymetrix HT Rat Focus Array	1388698_PM_at	-	-
Affymetrix HT Rat Focus Array	1388698_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200028891.rn.1	TC0200004216.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200028890.rn.1	TC0200004216.rn.1	RTA TC
Rat Expression Set 230	1388698_at	-	-
Rat Expression Set 230	1388698_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10825022	-	-
Rat Genome U34 Set	rc_AI237589_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21576361	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1362266	-	-
RatRef-12 Expression BeadChip	ILMN_49561	-	-