Rn01535167_g1

Gene Symbol:

Hmgb2 Hmgb2l1 RGD1559962

Gene Name:

high mobility group box 2

high mobility group box 2-like 1

similar to High mobility group protein 2 (HMG-2)

Gene Aliases:

Hmg2

RGD1564519

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Chromosome Location:

Chr.16: 36077617 - 36080191 on Build Rnor_6.0

Chromosome Location:

Chr.11: 49708042 - 49709128 on Build Rnor_6.0

Chromosome Location:

Chr.1: 20416742 - 20419141 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

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-

Assay Details

Gene Symbol: Hmgb2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_017187.2	NP_058883.1	3 - 4	450		66
GenBank mRNA	BC078866.1	-	2 - 3	308	7114119	66
	BC089854.1	-	3 - 4	450	7380208	66
	BC107455.1	-	3 - 4	479	7377505	66
	D84418.1	-	3 - 4	372		66
	FQ225084.1	-	3 - 4	414		66
	FQ229618.1	-	3 - 4	387		66
	FQ230440.1	-	3 - 4			66
	FQ233747.1	-	3 - 4	388		66

Gene Symbol: Hmgb2l1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_573272.5	XP_573272.3	1	387		66

Gene Symbol: RGD1559962
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008758645.1	XP_008756867.1	1	1802		66

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hmgb2
Click here to find siRNAs for Gene Hmgb2l1
Click here to find siRNAs for Gene RGD1559962

Gene Ontology Categories:

Process(es)

positive regulation of endothelial cell proliferation
base-excision repair, DNA ligation
chromatin remodeling
regulation of transcription from RNA polymerase II promoter
spermatogenesis
spermatid nucleus differentiation
nervous system development
male gonad development
organ regeneration
positive regulation of nuclease activity
positive regulation of DNA binding
positive regulation of erythrocyte differentiation
positive regulation of megakaryocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
response to steroid hormone
positive chemotaxis
positive regulation of DNA metabolic process
cell chemotaxis
cellular response to lipopolysaccharide
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
biological_process
regulation of transcription, DNA-templated

Function(s)

DNA binding
damaged DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
lipid binding
DNA binding, bending
protein domain specific binding
nucleosomal histone binding
chemoattractant activity
transcription regulatory region DNA binding
poly(A) RNA binding
RAGE receptor binding
molecular_function
chromatin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1600011814.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011816.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011808.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011809.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011812.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011811.rn.1	TC1600001549.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1600011806.rn.1	TC1600001549.rn.1	RTA TC
Rat Genome U34 Set	rc_AI008836_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357050	-	-
RatRef-12 Expression BeadChip	ILMN_68433	-	-