Rn01536583_m1

• Gene Symbol: Cx3cl1
• Gene Name: chemokine (C-X3-C motif) ligand 1
• Gene Aliases: Cx3c, Scyd1
• Chromosome Location: Chr.19: 10644267 - 10654946 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cx3cl1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_134455.1	NP_604450.1	2 - 3	211		90
	XM_008772329.1	XP_008770551.1	3 - 4	948		90
GenBank mRNA	AF030358.2	-	2 - 3	211		90
	BC070938.1	-	2 - 3	212		90

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900000992.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cx3cl1

Gene Ontology Categories:

Process(es)

response to hypoxia
microglial cell activation
negative regulation of cytokine production
positive regulation of neuroblast proliferation
chemotaxis
immune response
cell adhesion
aging
positive regulation of macrophage chemotaxis
cytokine-mediated signaling pathway
platelet activation
positive regulation of cell migration
neutrophil chemotaxis
positive regulation of transforming growth factor beta1 production
wound healing
positive regulation of angiogenesis
positive regulation of cell adhesion
negative regulation of vasoconstriction
macrophage chemotaxis
lymphocyte chemotaxis
positive regulation of smooth muscle cell proliferation
positive regulation of inflammatory response
positive regulation of calcium-independent cell-cell adhesion
angiogenesis involved in wound healing
inhibitory postsynaptic potential
cell chemotaxis
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

chemokine activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P116591	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	680327	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252270	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	216481	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	410622	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	957630	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	932744	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	431624	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	139747	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P116591	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P116591	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P116591	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P116591	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P116597	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	60218	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10809272	-	-
Affymetrix Rat Gene 1.0 ST Array	10809271	-	-
Affymetrix Rat Gene 1.0 ST Array	10809270	-	-
Affymetrix Rat Gene 1.1 ST Array	10809269	-	-
Rat Genome 230 2.0 Array	1368200_at	-	-
Rat Genome 230 2.0 Array	1368200_PM_at	-	-
Affymetrix HT Rat Focus Array	1368200_at	-	-
Affymetrix HT Rat Focus Array	1368200_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900007920.rn.1	TC1900000992.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900007921.rn.1	TC1900000992.rn.1	RTA TC
Rat Expression Set 230	1368200_at	-	-
Rat Expression Set 230	1368200_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10809269	-	-
Rat Genome U34 Set	rc_AA800602_s_at	-	-
Rat Genome U34 Set	AF030358_g_at	-	-
Rat Genome U34 Set	AF030358_at	-	-
Rat Genome U34 Set	rc_AI227647_s_at	-	-
Rat Genome U34 Set	AF030358_at	-	-
Rat Genome U34 Set	rc_AA800602_s_at	-	-
Rat Genome U34 Set	rc_AI227647_s_at	-	-
Rat Genome U34 Set	AF030358_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22002749	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371113	-	-
RatRef-12 Expression BeadChip	ILMN_61545	-	-