Rn01538239_g1

Gene Symbol:

Cyld-ps1 Cyld

Gene Name:

cylindromatosis (turban tumor syndrome), pseudogene 1

cylindromatosis (turban tumor syndrome)

Gene Aliases:

RGD1565647

LRRGT00003, Rp1, Rp1h

Chromosome Location:

Chr.5: 15087334 - 15091384 on Build Rnor_6.0

Chromosome Location:

Chr.19: 19260506 - 19323817 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Cyld-ps1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008763560.1	XP_008761782.1	1	2665		71

Gene Symbol: Cyld
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001017380.1	NP_001017380.1	15 - 16	2652		71
	XM_008772408.1	XP_008770630.1	15 - 16	3901		71
GenBank mRNA	AY383658.1	-	3 - 4	960		71
	BC082001.1	-	15 - 16	2652		71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900001090.rn.1

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

cytoplasmic translation
ubiquitin-dependent protein catabolic process
regulation of mitotic cell cycle
biological_process
Wnt signaling pathway
protein deubiquitination
negative regulation of NF-kappaB transcription factor activity
negative regulation of T cell differentiation
necroptotic process
regulation of microtubule cytoskeleton organization
protein K63-linked deubiquitination
negative regulation of canonical Wnt signaling pathway
ripoptosome assembly involved in necroptotic process
negative regulation of NIK/NF-kappaB signaling
regulation of cilium assembly
positive regulation of extrinsic apoptotic signaling pathway
regulation of intrinsic apoptotic signaling pathway

Function(s)

molecular_function
structural constituent of ribosome
thiol-dependent deubiquitinase
zinc ion binding
protein kinase binding
Lys63-specific deubiquitinase activity
proline-rich region binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1900008731.rn.1	TC1900001090.rn.1	RTA TC