Rn01538240_g1

Gene Symbol:

Cyld-ps1 Cyld

Gene Name:

cylindromatosis (turban tumor syndrome), pseudogene 1

cylindromatosis (turban tumor syndrome)

Gene Aliases:

RGD1565647

LRRGT00003, Rp1, Rp1h

Chromosome Location:

Chr.5: 15087334 - 15091384 on Build Rnor_6.0

Chromosome Location:

Chr.19: 19260506 - 19323817 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Cyld-ps1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008763560.1	XP_008761782.1	1	2884		73

Gene Symbol: Cyld
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001017380.1	NP_001017380.1	16 - 17	2871		73
	XM_008772408.1	XP_008770630.1	16 - 17	4120		73
GenBank mRNA	AY383658.1	-	4 - 5	1179		73
	BC082001.1	-	16 - 17	2871		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900001090.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

cytoplasmic translation
ubiquitin-dependent protein catabolic process
regulation of mitotic cell cycle
biological_process
Wnt signaling pathway
protein deubiquitination
negative regulation of NF-kappaB transcription factor activity
negative regulation of T cell differentiation
necroptotic process
regulation of microtubule cytoskeleton organization
protein K63-linked deubiquitination
negative regulation of canonical Wnt signaling pathway
ripoptosome assembly involved in necroptotic process
negative regulation of NIK/NF-kappaB signaling
regulation of cilium assembly
positive regulation of extrinsic apoptotic signaling pathway
regulation of intrinsic apoptotic signaling pathway

Function(s)

molecular_function
structural constituent of ribosome
thiol-dependent deubiquitinase
zinc ion binding
protein kinase binding
Lys63-specific deubiquitinase activity
proline-rich region binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P116665	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	267713	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	233191	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	301047	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	115962	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	148753	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	919744	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	181400	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	724405	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	725902	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	667126	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	448112	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	504540	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	112309	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	491352	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	162989	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	507774	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	920229	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	588295	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	821392	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	689368	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	476789	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	906340	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	619239	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	856035	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	767049	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	338530	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	746116	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	60169	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	86543	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	610454	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	939401	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	925075	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	107460	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	72446	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	117240	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	50433	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	95401	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	57678	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	69140	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	38232	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P116665	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P060456	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P060456	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P116665	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P116665	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P060456	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P256261	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64232	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	96768	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	100981	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10867422	-	-
Affymetrix Rat Gene 1.0 ST Array	10809652	-	-
Affymetrix Rat Gene 1.0 ST Array	10809664	-	-
Affymetrix Rat Gene 1.0 ST Array	10867418	-	-
Affymetrix Rat Gene 1.0 ST Array	10809648	-	-
Affymetrix Rat Gene 1.0 ST Array	10809654	-	-
Affymetrix Rat Gene 1.0 ST Array	10809650	-	-
Affymetrix Rat Gene 1.0 ST Array	10809651	-	-
Affymetrix Rat Gene 1.0 ST Array	10809653	-	-
Affymetrix Rat Gene 1.0 ST Array	10867421	-	-
Affymetrix Rat Gene 1.0 ST Array	10809646	-	-
Affymetrix Rat Gene 1.0 ST Array	10809647	-	-
Affymetrix Rat Gene 1.0 ST Array	10809663	-	-
Affymetrix Rat Gene 1.0 ST Array	10809649	-	-
Affymetrix Rat Gene 1.0 ST Array	10867417	-	-
Affymetrix Rat Gene 1.0 ST Array	10867420	-	-
Affymetrix Rat Gene 1.0 ST Array	10809661	-	-
Affymetrix Rat Gene 1.0 ST Array	10809659	-	-
Affymetrix Rat Gene 1.0 ST Array	10809658	-	-
Affymetrix Rat Gene 1.0 ST Array	10809645	-	-
Affymetrix Rat Gene 1.0 ST Array	10809660	-	-
Affymetrix Rat Gene 1.0 ST Array	10809662	-	-
Affymetrix Rat Gene 1.0 ST Array	10809656	-	-
Affymetrix Rat Gene 1.0 ST Array	10867419	-	-
Affymetrix Rat Gene 1.1 ST Array	10867416	-	-
Affymetrix Rat Gene 1.1 ST Array	10809643	-	-
Rat Genome 230 2.0 Array	1391091_at	-	-
Rat Genome 230 2.0 Array	1391091_PM_at	-	-
Rat Genome 230 2.0 Array	1392958_at	-	-
Rat Genome 230 2.0 Array	1392958_PM_at	-	-
Rat Genome 230 2.0 Array	1379287_at	-	-
Rat Genome 230 2.0 Array	1379287_PM_at	-	-
Affymetrix HT Rat Focus Array	1392958_PM_at	-	-
Affymetrix HT Rat Focus Array	1392958_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900008730.rn.1	TC1900001090.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900008724.rn.1	TC1900001090.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900008725.rn.1	TC1900001090.rn.1	RTA TC
Rat Expression Set 230	1392958_PM_at	-	-
Rat Expression Set 230	1392958_at	-	-
Rat Expression Set 230	1379287_at	-	-
Rat Expression Set 230	1391091_PM_at	-	-
Rat Expression Set 230	1391091_at	-	-
Rat Expression Set 230	1379287_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10867416	-	-
Affymetrix Rat Gene 1.0 ST Array	10809643	-	-
Rat Genome U34 Set	rc_AA891580_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22103009	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1374817	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1649726	-	-