Rn01538408_m1 Best Coverage

• Gene Symbol: Zeb1
• Gene Name: zinc finger E-box binding homeobox 1
• Gene Aliases: Tcf8, Zfhx1a, deltaEF1
• Chromosome Location: Chr.17: 54658463 - 54678819 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Zeb1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013164.1	NP_037296.1	7 - 8	2458		106
GenBank mRNA	AY325179.1	-	7 - 8	2458		106
	U51583.1	-		2705		106

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700001940.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Zeb1

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
pattern specification process
central nervous system development
negative regulation of cell proliferation
regulation of mesenchymal cell proliferation
response to activity
regulation of transforming growth factor beta receptor signaling pathway
negative regulation of epithelial cell differentiation
forebrain development
response to nutrient levels
regulation of T cell differentiation in thymus
positive regulation of neuron differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
animal organ development
embryonic camera-type eye morphogenesis
embryonic morphogenesis
embryonic skeletal system morphogenesis
semicircular canal morphogenesis
regulation of smooth muscle cell differentiation
cartilage development
cellular response to amino acid stimulus
cellular response to transforming growth factor beta stimulus
cochlea morphogenesis

Function(s)

transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription factor binding
zinc ion binding
sequence-specific DNA binding
metal ion binding
E-box binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P153979	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	863732	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	724403	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	443662	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	551951	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	673785	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	619972	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	714585	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	248167	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	538484	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	639497	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	966797	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	215698	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	604904	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	140080	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	46325	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	113932	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P153979	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P153979	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P153979	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P153979	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P688802	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700528056	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	26969	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64268	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	48380	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	30771	-	-
Agilent Rat cDNA Microarray (G4105A)	700528056	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10798785	-	-
Affymetrix Rat Gene 1.0 ST Array	10798783	-	-
Affymetrix Rat Gene 1.0 ST Array	10798787	-	-
Affymetrix Rat Gene 1.0 ST Array	10798782	-	-
Affymetrix Rat Gene 1.0 ST Array	10798781	-	-
Affymetrix Rat Gene 1.0 ST Array	10798786	-	-
Affymetrix Rat Gene 1.0 ST Array	10798784	-	-
Affymetrix Rat Gene 1.0 ST Array	10798789	-	-
Affymetrix Rat Gene 1.1 ST Array	10798780	-	-
Rat Genome 230 2.0 Array	1380200_at	-	-
Rat Genome 230 2.0 Array	1370965_PM_at	-	-
Rat Genome 230 2.0 Array	1370965_at	-	-
Rat Genome 230 2.0 Array	1380200_PM_at	-	-
Rat Genome 230 2.0 Array	1376673_PM_at	-	-
Rat Genome 230 2.0 Array	1376673_at	-	-
Affymetrix HT Rat Focus Array	1370965_PM_at	-	-
Affymetrix HT Rat Focus Array	1370965_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700013104.rn.1	TC1700001940.rn.1	RTA TC
Rat Expression Set 230	1370965_at	-	-
Rat Expression Set 230	1370965_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10798780	-	-
Rat Genome U34 Set	U51583_at	-	-
Rat Genome U34 Set	U51584_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1374962	-	-