Rn01642711_g1

• Gene Symbol: Ddx39a
• Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
• Gene Aliases: Ddx39, Ddxl
• Chromosome Location: Chr.19: 24846535 - 24854886 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ddx39a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053563.2	NP_446015.2	9 - 10	1420		133
	XM_006255314.2	XP_006255376.1	9 - 10	1320		133
GenBank mRNA	AF063447.1	-	9 - 10	1216		133
	BC086328.1	-	9 - 10	1420		133
	FQ231639.1	-	9 - 10	1326		133

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900000305.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ddx39a

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome
mRNA export from nucleus

Function(s)

RNA binding
helicase activity
ATP binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P149412	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	586776	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	444376	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	279176	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	675777	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	27183	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	134224	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P149412	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P149412	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P149412	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P149412	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700176125	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	75295	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	24155	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64920	-	-
Agilent Rat cDNA Microarray (G4105A)	700176125	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10810272	-	-
Affymetrix Rat Gene 1.0 ST Array	10810268	-	-
Affymetrix Rat Gene 1.0 ST Array	10810275	-	-
Affymetrix Rat Gene 1.0 ST Array	10810266	-	-
Affymetrix Rat Gene 1.0 ST Array	10810269	-	-
Affymetrix Rat Gene 1.0 ST Array	10810276	-	-
Affymetrix Rat Gene 1.0 ST Array	10810273	-	-
Affymetrix Rat Gene 1.0 ST Array	10810267	-	-
Affymetrix Rat Gene 1.0 ST Array	10810270	-	-
Affymetrix Rat Gene 1.0 ST Array	10810265	-	-
Affymetrix Rat Gene 1.0 ST Array	10810271	-	-
Affymetrix Rat Gene 1.0 ST Array	10810274	-	-
Affymetrix Rat Gene 1.1 ST Array	10810264	-	-
Rat Genome 230 2.0 Array	1387048_at	-	-
Rat Genome 230 2.0 Array	1387048_PM_at	-	-
Affymetrix HT Rat Focus Array	1387048_PM_at	-	-
Affymetrix HT Rat Focus Array	1387048_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900002298.rn.1	TC1900000305.rn.1	RTA TC
Rat Expression Set 230	1387048_PM_at	-	-
Rat Expression Set 230	1387048_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10810264	-	-
Rat Genome U34 Set	AF063447_at	-	-
Rat Genome U34 Set	rc_AI233796_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21614895	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367954	-	-
RatRef-12 Expression BeadChip	ILMN_52155	-	-