Sox17
Genomic Map
Back To TopAssay Details
| Gene Symbol: Sox17 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001107902.1 | NP_001101372.1 | 1 - 2 | 128 | 127 | |
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Additional Information:
This assay is in the 5'UTR region of the NM_001107902.1 transcripts.
Set Membership: |
Amplicon length greater than or equal to 101
Rattus norvegicus
Inventoried
Probe spans exons
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
angiogenesis
vasculogenesis
endoderm formation
inner cell mass cellular morphogenesis
heart looping
cardiogenic plate morphogenesis
embryonic heart tube morphogenesis
outflow tract morphogenesis
negative regulation of Wnt signaling pathway involved in heart development
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatogenesis
gastrulation
endoderm development
endodermal cell fate determination
biological_process
positive regulation of gene expression
rostrocaudal neural tube patterning
signal transduction involved in regulation of gene expression
negative regulation of Wnt signaling pathway
negative regulation of cell growth
protein destabilization
embryonic heart tube development
cell migration involved in gastrulation
regulation of mesodermal cell fate specification
negative regulation of mesodermal cell fate specification
mRNA transcription from RNA polymerase II promoter
regulation of cell differentiation
positive regulation of cell differentiation
positive regulation of protein catabolic process
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of embryonic development
embryonic organ development
embryonic foregut morphogenesis
positive regulation of skeletal muscle tissue development
stem cell differentiation
stem cell fate specification
protein stabilization
canonical Wnt signaling pathway
endocardium formation
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification
cardiac cell fate determination
endocardial cell differentiation
common bile duct development
gall bladder development
endodermal digestive tract morphogenesis
renal system development
regulation of stem cell proliferation
negative regulation of canonical Wnt signaling pathway
regulation of stem cell division
regulation of cardiac cell fate specification
RNA polymerase II transcription factor activity, sequence-specific DNA binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription coactivator activity
beta-catenin binding
transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
negative regulation of transcription from RNA polymerase II promoter
angiogenesis
vasculogenesis
endoderm formation
inner cell mass cellular morphogenesis
heart looping
cardiogenic plate morphogenesis
embryonic heart tube morphogenesis
outflow tract morphogenesis
negative regulation of Wnt signaling pathway involved in heart development
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatogenesis
gastrulation
endoderm development
endodermal cell fate determination
biological_process
positive regulation of gene expression
rostrocaudal neural tube patterning
signal transduction involved in regulation of gene expression
negative regulation of Wnt signaling pathway
negative regulation of cell growth
protein destabilization
embryonic heart tube development
cell migration involved in gastrulation
regulation of mesodermal cell fate specification
negative regulation of mesodermal cell fate specification
mRNA transcription from RNA polymerase II promoter
regulation of cell differentiation
positive regulation of cell differentiation
positive regulation of protein catabolic process
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of embryonic development
embryonic organ development
embryonic foregut morphogenesis
positive regulation of skeletal muscle tissue development
stem cell differentiation
stem cell fate specification
protein stabilization
canonical Wnt signaling pathway
endocardium formation
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification
cardiac cell fate determination
endocardial cell differentiation
common bile duct development
gall bladder development
endodermal digestive tract morphogenesis
renal system development
regulation of stem cell proliferation
negative regulation of canonical Wnt signaling pathway
regulation of stem cell division
regulation of cardiac cell fate specification
RNA polymerase II transcription factor activity, sequence-specific DNA binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription coactivator activity
beta-catenin binding
transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P483712 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 115583 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 70004 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 210908 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 723237 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 796746 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 151616 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P483712 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P483712 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P483712 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P499350 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P483712 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10867408 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10867407 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10867406 | - | - |
| Rat Genome 230 2.0 Array | 1378935_at | - | - |
| Rat Genome 230 2.0 Array | 1392990_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1390041_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1392990_at | - | - |
| Rat Genome 230 2.0 Array | 1378935_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1390041_at | - | - |
| Affymetrix HT Rat Focus Array | 1378935_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1378935_at | - | - |
| Affymetrix HT Rat Focus Array | 1392990_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1390041_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1392990_at | - | - |
| Affymetrix HT Rat Focus Array | 1390041_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0500000776.rn.1 | TC0500000118.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500000777.rn.1 | TC0500000118.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500000791.rn.1 | TC0500000118.rn.1 | RTA TC |
| Rat Expression Set 230 | 1390041_at | - | - |
| Rat Expression Set 230 | 1390041_PM_at | - | - |
| Rat Expression Set 230 | 1378935_PM_at | - | - |
| Rat Expression Set 230 | 1378935_at | - | - |
| Rat Expression Set 230 | 1392990_PM_at | - | - |
| Rat Expression Set 230 | 1392990_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10867406 | - | - |
| Rat Genome U34 Set | rc_AA799800_at | - | - |
| Rat Genome U34 Set | rc_AI031004_at | - | - |
| Rat Genome U34 Set | rc_AI235684_at | - | - |
| Rat Genome U34 Set | rc_AI172568_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1359017 | - | - |
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