Rn01751070_m1 Best Coverage

• Gene Symbol: Sox9
• Gene Name: SRY (sex determining region Y)-box 9
• Gene Aliases: -
• Chromosome Location: Chr.10: 101288354 - 101294030 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_003750950.3	XP_003750998.1	2 - 3	1177		102

More Information

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
skeletal system development
cartilage condensation
ossification
branching involved in ureteric bud morphogenesis
cell fate specification
epithelial to mesenchymal transition
tissue homeostasis
positive regulation of protein phosphorylation
hair follicle development
positive regulation of mesenchymal cell proliferation
chondrocyte development
negative regulation of immune system process
heart valve development
heart valve morphogenesis
heart valve formation
endocardial cushion morphogenesis
chondrocyte differentiation involved in endochondral bone morphogenesis
chondrocyte hypertrophy
nucleosome assembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
protein complex assembly
protein phosphorylation
cytoskeleton organization
signal transduction
epidermal growth factor receptor signaling pathway
spermatogenesis
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
male gonad development
regulation of cell cycle process
positive regulation of gene expression
negative regulation of gene expression
positive regulation of epithelial cell migration
neural crest cell development
positive regulation of phosphatidylinositol 3-kinase signaling
single organismal cell-cell adhesion
male germ-line sex determination
cAMP-mediated signaling
cell differentiation
regulation of cell adhesion
extracellular matrix organization
male sex determination
negative regulation of ossification
negative regulation of bone mineralization
prostate gland development
negative regulation of epithelial cell differentiation
positive regulation of epithelial cell differentiation
mammary gland development
notochord development
otic vesicle formation
endocrine pancreas development
negative regulation of chondrocyte differentiation
positive regulation of chondrocyte differentiation
lacrimal gland development
protein localization to nucleus
somatic stem cell population maintenance
intrahepatic bile duct development
regulation of cell proliferation
regulation of apoptotic process
negative regulation of apoptotic process
protein kinase B signaling
cell fate commitment
regulation of cell differentiation
negative regulation of myoblast differentiation
positive regulation of protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of photoreceptor cell differentiation
oligodendrocyte differentiation
homeostasis of number of cells within a tissue
positive regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
cartilage development
Sertoli cell differentiation
Sertoli cell development
astrocyte fate commitment
retina development in camera-type eye
limb bud formation
retinal rod cell differentiation
endochondral bone morphogenesis
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
prostate gland morphogenesis
epithelial cell proliferation involved in prostatic bud elongation
bronchus cartilage development
trachea cartilage development
intestinal epithelial structure maintenance
regulation of cell proliferation involved in tissue homeostasis
positive regulation of cartilage development
regulation of branching involved in lung morphogenesis
morphogenesis of a branching epithelium
lung smooth muscle development
negative regulation of biomineral tissue development
ERK1 and ERK2 cascade
Harderian gland development
cellular response to mechanical stimulus
cellular response to retinoic acid
cellular response to interleukin-1
cellular response to epidermal growth factor stimulus
cellular response to heparin
cellular response to transforming growth factor beta stimulus
renal vesicle induction
ureter development
ureter urothelium development
ureter smooth muscle cell differentiation
ureter morphogenesis
metanephric nephron tubule formation
negative regulation of canonical Wnt signaling pathway
cochlea morphogenesis
positive regulation of kidney development
positive regulation of branching involved in ureteric bud morphogenesis
positive regulation of extracellular matrix assembly
positive regulation of male gonad development
positive regulation of cell proliferation involved in heart morphogenesis
positive regulation of mesenchymal stem cell differentiation
regulation of epithelial cell proliferation involved in lung morphogenesis
negative regulation of mesenchymal cell apoptotic process

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein kinase activity
protein binding
beta-catenin binding
protein kinase A catalytic subunit binding
enhancer binding
bHLH transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
pre-mRNA intronic binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P033293	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P033298	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P033293	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P033298	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P033298	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P033293	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P033298	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P033293	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P263110	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P745356	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P102481	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P221245	-	-

Array Name	Probe IDs	Targets	Target Type
Rat Genome 230 2.0 Array	1386387_at	-	-
Rat Genome 230 2.0 Array	1386387_PM_at	-	-
Affymetrix HT Rat Focus Array	1392813_at	-	-
Affymetrix HT Rat Focus Array	1392813_PM_at	-	-
Rat Expression Set 230	1386387_PM_at	-	-
Rat Expression Set 230	1386387_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21181500	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1650206	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1361412	-	-
RatRef-12 Expression BeadChip	ILMN_55781	-	-