Rn01751636_m1 Best Coverage

• Gene Symbol: Shmt1
• Gene Name: serine hydroxymethyltransferase 1 (soluble)
• Gene Aliases: LRRGT00032, Shmt, mShmt
• Chromosome Location: Chr.10: 47030812 - 47059216 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Shmt1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001047842.1	NP_001041307.1	13 - 14	1760		98
	XM_006246469.2	XP_006246531.1	10 - 11	1543		98
GenBank mRNA	AY383687.1	-	13 - 14	1760		98
	BC099219.1	-	6 - 7	774		98

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002942.rn.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Process(es)

glycine metabolic process
glycine biosynthetic process
L-serine metabolic process
L-serine catabolic process
purine nucleobase biosynthetic process
glycine biosynthetic process from serine
tetrahydrofolate interconversion
folic acid metabolic process
protein tetramerization
protein homotetramerization

Function(s)

glycine hydroxymethyltransferase activity
L-allo-threonine aldolase activity
amino acid binding
pyridoxal phosphate binding
identical protein binding
protein homodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P132367	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	386522	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	952357	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	391380	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	199180	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	97999	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	754064	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	132570	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	852282	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	581210	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	435161	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	346281	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	458102	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	937579	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	208342	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	789374	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	380135	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	841481	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	118311	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	162328	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P132367	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P132367	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P132367	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1055774	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P508239	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P160813	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	14508	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	93245	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10743330	-	-
Affymetrix Rat Gene 1.0 ST Array	10743323	-	-
Affymetrix Rat Gene 1.0 ST Array	10743322	-	-
Affymetrix Rat Gene 1.0 ST Array	10743324	-	-
Affymetrix Rat Gene 1.0 ST Array	10743320	-	-
Affymetrix Rat Gene 1.0 ST Array	10743327	-	-
Affymetrix Rat Gene 1.0 ST Array	10743333	-	-
Affymetrix Rat Gene 1.0 ST Array	10743329	-	-
Affymetrix Rat Gene 1.0 ST Array	10743332	-	-
Affymetrix Rat Gene 1.0 ST Array	10743328	-	-
Affymetrix Rat Gene 1.0 ST Array	10743325	-	-
Affymetrix Rat Gene 1.0 ST Array	10743331	-	-
Affymetrix Rat Gene 1.0 ST Array	10743321	-	-
Affymetrix Rat Gene 1.0 ST Array	10743326	-	-
Affymetrix Rat Gene 1.0 ST Array	10743319	-	-
Affymetrix Rat Gene 1.1 ST Array	10743318	-	-
Rat Genome 230 2.0 Array	1373625_at	-	-
Rat Genome 230 2.0 Array	1374748_PM_at	-	-
Rat Genome 230 2.0 Array	1374748_at	-	-
Rat Genome 230 2.0 Array	1373625_PM_at	-	-
Affymetrix HT Rat Focus Array	1373625_PM_at	-	-
Affymetrix HT Rat Focus Array	1374748_at	-	-
Affymetrix HT Rat Focus Array	1373625_at	-	-
Affymetrix HT Rat Focus Array	1374748_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000025873.rn.1	TC1000002942.rn.1	RTA TC
Rat Expression Set 230	1373625_PM_at	-	-
Rat Expression Set 230	1374748_at	-	-
Rat Expression Set 230	1373625_at	-	-
Rat Expression Set 230	1374748_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10743318	-	-
Rat Genome U34 Set	rc_AI011901_g_at	-	-
Rat Genome U34 Set	rc_AI011901_at	-	-
Rat Genome U34 Set	rc_AI012348_at	-	-
Rat Genome U34 Set	rc_AA819027_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20930758	-	-
ABI Rat Genome Survey Microarray	21771064	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356184	-	-