Rn01751757_g1 Best Coverage

• Gene Symbol: Stub1
• Gene Name: STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase
• Gene Aliases: Chip
• Chromosome Location: Chr.10: 15197754 - 15200035 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Stub1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001025625.2	NP_001020796.2	3 - 4	633		65
GenBank mRNA	BC099240.1	-	3 - 4	580	7445727	65
	CB326459.1	-	4 - 5			65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002441.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Stub1

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

protein polyubiquitination
ubiquitin-dependent protein catabolic process
misfolded or incompletely synthesized protein catabolic process
ubiquitin-dependent SMAD protein catabolic process
endoplasmic reticulum unfolded protein response
positive regulation of protein ubiquitination
regulation of glucocorticoid metabolic process
negative regulation of protein binding
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
proteasome-mediated ubiquitin-dependent protein catabolic process
positive regulation of ubiquitin-protein transferase activity
protein autoubiquitination
protein K63-linked ubiquitination
cellular response to misfolded protein
positive regulation of chaperone-mediated protein complex assembly

Function(s)

G-protein coupled receptor binding
ubiquitin-protein transferase activity
protein binding
ligase activity
enzyme binding
kinase binding
Hsp70 protein binding
TPR domain binding
ubiquitin protein ligase binding
ubiquitin-ubiquitin ligase activity
protein homodimerization activity
SMAD binding
misfolded protein binding
Hsp90 protein binding
ubiquitin protein ligase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P089091	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P089091	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P089091	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P089091	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P161831	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10741541	-	-
Affymetrix Rat Gene 1.0 ST Array	10741539	-	-
Affymetrix Rat Gene 1.0 ST Array	10741537	-	-
Affymetrix Rat Gene 1.0 ST Array	10741543	-	-
Affymetrix Rat Gene 1.0 ST Array	10741536	-	-
Affymetrix Rat Gene 1.0 ST Array	10741540	-	-
Affymetrix Rat Gene 1.0 ST Array	10741538	-	-
Affymetrix Rat Gene 1.0 ST Array	10741542	-	-
Affymetrix Rat Gene 1.1 ST Array	10741535	-	-
Affymetrix Rat Gene 1.1 ST Array	10732511	-	-
Rat Genome 230 2.0 Array	1398910_PM_at	-	-
Rat Genome 230 2.0 Array	1374124_at	-	-
Rat Genome 230 2.0 Array	1398910_at	-	-
Rat Genome 230 2.0 Array	1374124_PM_at	-	-
Affymetrix HT Rat Focus Array	1398910_PM_at	-	-
Affymetrix HT Rat Focus Array	1398910_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000021996.rn.1	TC1000002441.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000021995.rn.1	TC1000002441.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000021998.rn.1	TC1000002441.rn.1	RTA TC
Rat Expression Set 230	1398910_PM_at	-	-
Rat Expression Set 230	1398910_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10741535	-	-
Rat Genome U34 Set	rc_AA849721_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21313256	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1350492	-	-