Rn01754210_gH Best Coverage

• Gene Symbol: Sox18
• Gene Name: SRY (sex determining region Y)-box 18
• Gene Aliases: -
• Chromosome Location: Chr.3: 177177237 - 177179039 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox18
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001024781.1	NP_001019952.1	1 - 2	444		55
GenBank mRNA	BC097973.1	-	1 - 2	444	7442067	55

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300005062.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox18

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
angiogenesis
blood vessel development
vasculogenesis
in utero embryonic development
hair follicle development
vasculature development
lymph vessel development
lymphangiogenesis
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
heart development
biological_process
hair cycle process
embryonic heart tube development
mRNA transcription from RNA polymerase II promoter
blood vessel endothelial cell migration
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
cell maturation
stem cell fate specification
endocardium formation
lymphatic endothelial cell differentiation
endocardial cell differentiation
establishment of endothelial barrier
regulation of stem cell proliferation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P623913	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	535528	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P623913	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P623913	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P623913	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P454913	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P623913	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	7245	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10852596	-	-
Affymetrix Rat Gene 1.0 ST Array	10852597	-	-
Affymetrix Rat Gene 1.1 ST Array	10852595	-	-
Rat Genome 230 2.0 Array	1381971_PM_at	-	-
Rat Genome 230 2.0 Array	1381971_at	-	-
Affymetrix HT Rat Focus Array	1381971_PM_at	-	-
Affymetrix HT Rat Focus Array	1381971_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300038554.rn.1	TC0300005062.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300038555.rn.1	TC0300005062.rn.1	RTA TC
Rat Expression Set 230	1381971_at	-	-
Rat Expression Set 230	1381971_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10852595	-	-
Rat Genome U34 Set	rc_AI103349_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22395853	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1348946	-	-