Rn01756649_g1 Best Coverage

• Gene Symbol: Elk1
• Gene Name: ELK1, member of ETS oncogene family
• Gene Aliases: -
• Chromosome Location: Chr.X: 1287875 - 1304822 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Elk1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108059.3	NP_001101529.1	5 - 6	1289		56
	XM_006256614.2	XP_006256676.1	4 - 5	2271		56
GenBank mRNA	EF429098.1	-	3 - 4	1087		56

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00002680.rn.1

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription by RNA polymerase II
response to light stimulus
cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
cellular response to testosterone stimulus
cellular response to lipid
cellular response to gamma radiation
positive regulation of neuron death

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
core promoter sequence-specific DNA binding
chromatin binding
double-stranded DNA binding
DNA-binding transcription factor activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P076896	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	744203	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	602257	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	948041	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	808479	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P076896	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P076896	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P076896	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P21732	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P521797	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10936521	-	-
Affymetrix Rat Gene 1.0 ST Array	10936525	-	-
Affymetrix Rat Gene 1.0 ST Array	10936523	-	-
Affymetrix Rat Gene 1.0 ST Array	10936522	-	-
Affymetrix Rat Gene 1.0 ST Array	10936524	-	-
Affymetrix Rat Gene 1.1 ST Array	10936520	-	-
Rat Genome 230 2.0 Array	1385063_at	-	-
Rat Genome 230 2.0 Array	1385063_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0X00017062.rn.1	TC0X00002680.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10936520	-	-
Rat Genome U34 Set	rc_AI137804_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22398208	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1651026	-	-