Rn01757306_g1

Gene Symbol:

LOC100911260 Hcfc1

Gene Name:

host cell factor 1-like

host cell factor C1

Gene Aliases:

-

RGD1563804

Chromosome Location:

Chr.X: 156759369 - 156771130 on Build Rnor_6.0

Chromosome Location:

Chr.X: 156812057 - 156837227 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: LOC100911260
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_006229638.1	XP_006229700.1	6 - 7	2212		67

Gene Symbol: Hcfc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001139507.1	NP_001132979.1	17 - 18	5481		67
	XM_006229593.2	XP_006229655.1	17 - 18	5460		67
	XM_006229594.2	XP_006229656.1	17 - 18	5459		67
	XM_006229596.2	XP_006229658.1	17 - 18	5457		67
	XM_006229597.1	XP_006229659.1	17 - 18	5476		67

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00001304.rn.1

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
positive regulation of gene expression
release from viral latency
regulation of protein complex assembly
histone H4-K5 acetylation
histone H4-K8 acetylation
histone H4-K16 acetylation
positive regulation of transcription from RNA polymerase II promoter
protein stabilization
cellular response to organic cyclic compound

Function(s)

transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
molecular_function
chromatin binding
transcription coactivator activity
identical protein binding
histone acetyltransferase activity (H4-K5 specific)
histone acetyltransferase activity (H4-K8 specific)
histone acetyltransferase activity (H4-K16 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0X00007896.rn.1	TC0X00001304.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00007897.rn.1	TC0X00001304.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0X00007895.rn.1	TC0X00001304.rn.1	RTA TC