Rn01758426_m1 Best Coverage

• Gene Symbol: Traf2
• Gene Name: Tnf receptor-associated factor 2
• Gene Aliases: -
• Chromosome Location: Chr.3: 2746061 - 2770686 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Traf2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107815.2	NP_001101285.1	5 - 6	650		63
	XM_006233594.2	XP_006233656.1	6 - 7	710		63
	XM_006233596.2	XP_006233658.1	5 - 6	554		63
	XM_008761588.1	XP_008759810.1	6 - 7	656		63
GenBank mRNA	BC169064.1	-	5 - 6	650	5599352	63

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002684.rn.1

• Set Membership: Amplicon length less than or equal to 70, Apoptosis, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

positive regulation of T cell cytokine production
protein complex assembly
signal transduction
activation of NF-kappaB-inducing kinase activity
protein catabolic process
positive regulation of interleukin-2 production
tumor necrosis factor-mediated signaling pathway
negative regulation of glial cell apoptotic process
regulation of apoptotic process
positive regulation of JUN kinase activity
cellular protein complex assembly
regulation of JNK cascade
regulation of immunoglobulin secretion
positive regulation of sequence-specific DNA binding transcription factor activity
positive regulation of NF-kappaB transcription factor activity
protein heterooligomerization
protein autoubiquitination
protein homotrimerization
protein K63-linked ubiquitination
cellular response to nitric oxide
positive regulation of protein homodimerization activity
programmed necrotic cell death
positive regulation of extrinsic apoptotic signaling pathway

Function(s)

ubiquitin-protein transferase activity
receptor binding
tumor necrosis factor receptor binding
CD40 receptor binding
protein binding
zinc ion binding
enzyme binding
protein phosphatase binding
mitogen-activated protein kinase kinase kinase binding
ubiquitin protein ligase binding
thioesterase binding
protein complex binding
identical protein binding
sphingolipid binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P241277	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	493482	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	228613	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	228724	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	529170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	476567	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	31055	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385107	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	932043	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	338178	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	245333	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	877354	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	314569	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	353223	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	943340	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	678077	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	214266	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	322516	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	948889	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	309169	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	118019	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	18526	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P241277	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P241277	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P241277	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P241277	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	47761	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	46108	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10843487	-	-
Affymetrix Rat Gene 1.0 ST Array	10843490	-	-
Affymetrix Rat Gene 1.0 ST Array	10843485	-	-
Affymetrix Rat Gene 1.0 ST Array	10843488	-	-
Affymetrix Rat Gene 1.0 ST Array	10843492	-	-
Affymetrix Rat Gene 1.0 ST Array	10843484	-	-
Affymetrix Rat Gene 1.0 ST Array	10843486	-	-
Affymetrix Rat Gene 1.0 ST Array	10843491	-	-
Affymetrix Rat Gene 1.0 ST Array	10843489	-	-
Affymetrix Rat Gene 1.1 ST Array	10843483	-	-
Rat Genome 230 2.0 Array	1372664_PM_at	-	-
Rat Genome 230 2.0 Array	1372664_at	-	-
Affymetrix HT Rat Focus Array	1372664_PM_at	-	-
Affymetrix HT Rat Focus Array	1372664_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300020037.rn.1	TC0300002684.rn.1	RTA TC
Rat Expression Set 230	1372664_PM_at	-	-
Rat Expression Set 230	1372664_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10843483	-	-
Rat Genome U34 Set	rc_H32966_at	-	-
Rat Genome U34 Set	rc_AI058577_i_at	-	-
Rat Genome U34 Set	rc_AI058577_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373728	-	-