Rn01759679_g1 Best Coverage

• Gene Symbol: Otub1
• Gene Name: OTU deubiquitinase, ubiquitin aldehyde binding 1
• Gene Aliases: -
• Chromosome Location: Chr.1: 222451674 - 222459952 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Otub1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001106332.1	NP_001099802.1	6 - 7	640		60
GenBank mRNA	BC166771.1	-	6 - 7	623		60

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100007191.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

immune system process
DNA repair
proteolysis
cellular response to DNA damage stimulus
protein K48-linked deubiquitination
cellular response to interleukin-1
negative regulation of histone H2A K63-linked ubiquitination
negative regulation of double-strand break repair

Function(s)

molecular_function
thiol-dependent deubiquitinase
NEDD8-specific protease activity
ubiquitin protein ligase binding
ubiquitin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P028411	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P090588	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	229212	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	845952	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	154097	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621443	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583349	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	845434	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	850106	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	42218	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P028411	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P090588	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P028411	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P090588	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P090588	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P028411	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P275761	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	89353	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10728378	-	-
Affymetrix Rat Gene 1.0 ST Array	10728380	-	-
Affymetrix Rat Gene 1.0 ST Array	10728379	-	-
Affymetrix Rat Gene 1.0 ST Array	10728382	-	-
Affymetrix Rat Gene 1.0 ST Array	10728381	-	-
Affymetrix Rat Gene 1.1 ST Array	10728377	-	-
Rat Genome 230 2.0 Array	1399073_PM_at	-	-
Rat Genome 230 2.0 Array	1399073_at	-	-
Rat Genome 230 2.0 Array	1372958_at	-	-
Rat Genome 230 2.0 Array	1372958_PM_at	-	-
Affymetrix HT Rat Focus Array	1399073_at	-	-
Affymetrix HT Rat Focus Array	1399073_PM_at	-	-
Affymetrix HT Rat Focus Array	1372958_PM_at	-	-
Affymetrix HT Rat Focus Array	1372958_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100057917.rn.1	TC0100007191.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100057916.rn.1	TC0100007191.rn.1	RTA TC
Rat Expression Set 230	1372958_at	-	-
Rat Expression Set 230	1399073_at	-	-
Rat Expression Set 230	1372958_PM_at	-	-
Rat Expression Set 230	1399073_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10728377	-	-
Rat Genome U34 Set	rc_AA944451_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21939217	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1360532	-	-