Rn01761379_m1

• Gene Symbol: Ccrn4l
• Gene Name: CCR4 carbon catabolite repression 4-like (S. cerevisiae)
• Gene Aliases: Ccr4, Ccrn4lb
• Chromosome Location: Chr.2: 140286661 - 140306869 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ccrn4l
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_138526.1	NP_612535.1	2 - 3	678		77
GenBank mRNA	AF199495.1	-	1 - 2	235		77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200001107.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

mRNA polyadenylation factor

Gene Ontology Categories:

Process(es)

deadenylation-dependent decapping of nuclear-transcribed mRNA
mRNA processing
response to extracellular stimulus
negative regulation of gene expression
response to lipopolysaccharide
circadian regulation of gene expression
cytoplasmic mRNA processing body assembly
regulation of circadian rhythm
positive regulation of fat cell differentiation
negative regulation of osteoblast differentiation
regulation of embryonic development
mRNA stabilization
RNA phosphodiester bond hydrolysis, exonucleolytic

Function(s)

mRNA binding
poly(A)-specific ribonuclease activity
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P079503	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	365694	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	459527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	386721	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	736258	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	39277	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	365147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	517539	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	727919	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	122796	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	436566	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	600228	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	288503	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	150553	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	625612	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	67461	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079503	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079503	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P079503	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P10814	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15854	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67243	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10815283	-	-
Affymetrix Rat Gene 1.0 ST Array	10815282	-	-
Affymetrix Rat Gene 1.1 ST Array	10815281	-	-
Rat Genome 230 2.0 Array	1377869_PM_at	-	-
Rat Genome 230 2.0 Array	1377869_at	-	-
Affymetrix HT Rat Focus Array	1377869_PM_at	-	-
Affymetrix HT Rat Focus Array	1377869_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200007015.rn.1	TC0200001107.rn.1	RTA TC
Rat Expression Set 230	1377869_at	-	-
Rat Expression Set 230	1377869_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10815281	-	-
Rat Genome U34 Set	rc_AA900290_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21297585	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367962	-	-