Rn01761874_g1 Best Coverage

• Gene Symbol: Scaf11
• Gene Name: SR-related CTD-associated factor 11
• Gene Aliases: Sfrs2ip, Srsf2ip
• Chromosome Location: Chr.7: 137804019 - 137856337 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Scaf11
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271170.1	NP_001258099.1	14 - 15	4232		156
GenBank mRNA	AY724482.1	-	5 - 6	2645		156

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700003798.rn.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

spliceosomal complex assembly
RNA splicing, via transesterification reactions
RNA splicing

Function(s)

zinc ion binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P005263	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P005263	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P005263	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P100959	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1050728	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1059623	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.1 ST Array	10906578	-	-
Rat Genome 230 2.0 Array	1374154_at	-	-
Rat Genome 230 2.0 Array	1383043_PM_at	-	-
Rat Genome 230 2.0 Array	1373303_PM_at	-	-
Rat Genome 230 2.0 Array	1373303_at	-	-
Rat Genome 230 2.0 Array	1397528_at	-	-
Rat Genome 230 2.0 Array	1397528_PM_at	-	-
Rat Genome 230 2.0 Array	1374154_PM_at	-	-
Rat Genome 230 2.0 Array	1383043_at	-	-
Affymetrix HT Rat Focus Array	1373303_PM_at	-	-
Affymetrix HT Rat Focus Array	1383043_at	-	-
Affymetrix HT Rat Focus Array	1373303_at	-	-
Affymetrix HT Rat Focus Array	1374154_PM_at	-	-
Affymetrix HT Rat Focus Array	1374154_at	-	-
Affymetrix HT Rat Focus Array	1383043_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700030212.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030211.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030213.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030214.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030216.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030218.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030220.rn.1	TC0700003798.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700030217.rn.1	TC0700003798.rn.1	RTA TC
Rat Expression Set 230	1374154_at	-	-
Rat Expression Set 230	1373303_at	-	-
Rat Expression Set 230	1373303_PM_at	-	-
Rat Expression Set 230	1374154_PM_at	-	-
Rat Expression Set 230	1397528_PM_at	-	-
Rat Expression Set 230	1383043_PM_at	-	-
Rat Expression Set 230	1397528_at	-	-
Rat Expression Set 230	1383043_at	-	-
Rat Genome U34 Set	rc_AI012492_at	-	-
Rat Genome U34 Set	rc_AI171463_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22401015	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1355943	-	-
RatRef-12 Expression BeadChip	ILMN_51548	-	-