Rn01762393_m1 Best Coverage

• Gene Symbol: Chst5
• Gene Name: carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
• Gene Aliases: RGD1561144
• Chromosome Location: Chr.19: 44115080 - 44136092 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Chst5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107431.1	NP_001100901.1	1 - 2	152		95
GenBank mRNA	FQ213398.1	-	1 - 2	186		95

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900001482.rn.1

• Set Membership: Amplicon length between 86 and 100, 3' Most, Recommended Assay, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
N-acetylglucosamine metabolic process
sulfur compound metabolic process
biological_process
keratan sulfate biosynthetic process

Function(s)

N-acetylglucosamine 6-O-sulfotransferase activity
molecular_function

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P062593	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	939600	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	734538	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	317860	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	717636	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	4450	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	637036	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	865921	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	676948	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	648405	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	757447	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	851413	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	481701	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	343157	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	2058	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	88339	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P062593	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P062593	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P062593	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P20567	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10811207	-	-
Affymetrix Rat Gene 1.1 ST Array	10811206	-	-
Rat Genome 230 2.0 Array	1392444_PM_at	-	-
Rat Genome 230 2.0 Array	1394264_PM_at	-	-
Rat Genome 230 2.0 Array	1392444_at	-	-
Rat Genome 230 2.0 Array	1394264_at	-	-
Affymetrix HT Rat Focus Array	1394264_PM_at	-	-
Affymetrix HT Rat Focus Array	1394264_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900012219.rn.1	TC1900001482.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900012211.rn.1	TC1900001482.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900012213.rn.1	TC1900001482.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900012218.rn.1	TC1900001482.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900012214.rn.1	TC1900001482.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900012212.rn.1	TC1900001482.rn.1	RTA TC
Rat Expression Set 230	1392444_at	-	-
Rat Expression Set 230	1394264_PM_at	-	-
Rat Expression Set 230	1394264_at	-	-
Rat Expression Set 230	1392444_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10811206	-	-
Rat Genome U34 Set	rc_AA901091_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1361444	-	-