Rn01766162_m1

• Gene Symbol: Trub1
• Gene Name: TruB pseudouridine (psi) synthase family member 1
• Gene Aliases: -
• Chromosome Location: Chr.1: 278311361 - 278418347 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trub1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001012173.1	NP_001012173.1	7 - 8	782		55
	XM_008760538.1	XP_008758760.1	7 - 8	813		55
GenBank mRNA	BC087683.1	-	7 - 8	782	7320660	55

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100003875.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trub1

Panther Classification:

Molecular Function -

isomerase

Gene Ontology Categories:

Process(es)

pseudouridine synthesis
RNA processing
tRNA processing

Function(s)

RNA binding
pseudouridine synthase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P403005	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	324264	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	335367	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	793811	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	572902	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	821592	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	90874	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	479545	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	868958	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	394593	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	415157	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	138877	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	382324	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	424947	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6943	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	3741	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	217323	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	99225	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	42385	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	661792	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	370012	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	328151	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	492440	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	687380	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252578	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	835797	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	578567	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	189730	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	327810	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	170374	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	60131	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	142984	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	102111	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P403005	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P403005	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P403005	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P403005	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	34023	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	53201	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	78353	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64874	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10716329	-	-
Affymetrix Rat Gene 1.0 ST Array	10716324	-	-
Affymetrix Rat Gene 1.0 ST Array	10716323	-	-
Affymetrix Rat Gene 1.0 ST Array	10716328	-	-
Affymetrix Rat Gene 1.0 ST Array	10716322	-	-
Affymetrix Rat Gene 1.0 ST Array	10716321	-	-
Affymetrix Rat Gene 1.0 ST Array	10716330	-	-
Affymetrix Rat Gene 1.0 ST Array	10716325	-	-
Affymetrix Rat Gene 1.0 ST Array	10716327	-	-
Affymetrix Rat Gene 1.0 ST Array	10716326	-	-
Affymetrix Rat Gene 1.1 ST Array	10716320	-	-
Rat Genome 230 2.0 Array	1382151_at	-	-
Rat Genome 230 2.0 Array	1382151_PM_at	-	-
Affymetrix HT Rat Focus Array	1382151_at	-	-
Affymetrix HT Rat Focus Array	1382151_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100031693.rn.1	TC0100003875.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100031689.rn.1	TC0100003875.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100031690.rn.1	TC0100003875.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100031692.rn.1	TC0100003875.rn.1	RTA TC
Rat Expression Set 230	1382151_at	-	-
Rat Expression Set 230	1382151_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10716320	-	-
Rat Genome U34 Set	rc_AI145625_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21308298	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376771	-	-