Rn01768056_g1

• Gene Symbol: Shmt2
• Gene Name: serine hydroxymethyltransferase 2 (mitochondrial)
• Gene Aliases: -
• Chromosome Location: Chr.7: 70824719 - 70829824 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Shmt2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008322.1	NP_001008323.1	9 - 10	1178		96
	XM_006241453.2	XP_006241515.1	9 - 10	1204		96
GenBank mRNA	BC085331.1	-	9 - 10	1178	7106911	96

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002923.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Shmt2

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Process(es)

glycine metabolic process
glycine biosynthetic process
L-serine metabolic process
L-serine biosynthetic process
one-carbon metabolic process
positive regulation of cell proliferation
glycine biosynthetic process from serine
methylation
tetrahydrofolate interconversion
protein homotetramerization

Function(s)

chromatin binding
glycine hydroxymethyltransferase activity
methyltransferase activity
L-allo-threonine aldolase activity
amino acid binding
pyridoxal phosphate binding
identical protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P501843	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	267012	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	92062	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	132024	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	515234	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P501843	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P501843	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P501843	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P501843	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10903069	-	-
Affymetrix Rat Gene 1.0 ST Array	10903072	-	-
Affymetrix Rat Gene 1.0 ST Array	10903071	-	-
Affymetrix Rat Gene 1.0 ST Array	10903066	-	-
Affymetrix Rat Gene 1.0 ST Array	10903062	-	-
Affymetrix Rat Gene 1.0 ST Array	10903068	-	-
Affymetrix Rat Gene 1.0 ST Array	10903065	-	-
Affymetrix Rat Gene 1.0 ST Array	10903070	-	-
Affymetrix Rat Gene 1.0 ST Array	10903067	-	-
Affymetrix Rat Gene 1.0 ST Array	10903064	-	-
Affymetrix Rat Gene 1.0 ST Array	10903063	-	-
Affymetrix Rat Gene 1.0 ST Array	10903073	-	-
Affymetrix Rat Gene 1.1 ST Array	10903061	-	-
Rat Genome 230 2.0 Array	1388695_at	-	-
Rat Genome 230 2.0 Array	1388695_PM_at	-	-
Affymetrix HT Rat Focus Array	1388695_PM_at	-	-
Affymetrix HT Rat Focus Array	1388695_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700022606.rn.1	TC0700002923.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700022605.rn.1	TC0700002923.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700022607.rn.1	TC0700002923.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700022608.rn.1	TC0700002923.rn.1	RTA TC
Rat Expression Set 230	1388695_PM_at	-	-
Rat Expression Set 230	1388695_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10903061	-	-
Rat Genome U34 Set	rc_AI104298_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21271735	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1368671	-	-
RatRef-12 Expression BeadChip	ILMN_60571	-	-