Rn02114316_gH Best Coverage

• Gene Symbol: Hdac1l
• Gene Name: histone deacetylase 1-like
• Gene Aliases: -
• Chromosome Location: Chr.9: 84893145 - 84894599 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hdac1l
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053446.1	NP_445898.1	1	1213		119
GenBank mRNA	AF321129.1	-	1	535		119

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Both primers and probe map within a single exon

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
biological_process
positive regulation of cell proliferation
positive regulation of receptor biosynthetic process
circadian regulation of gene expression
ATP-dependent chromatin remodeling
negative regulation by host of viral transcription
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of androgen receptor signaling pathway
histone H3-K9 modification
histone H3 deacetylation
histone H4 deacetylation

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
core promoter binding
RNA polymerase II repressing transcription factor binding
RNA polymerase II transcription corepressor activity
molecular_function
histone deacetylase activity
deacetylase activity
nucleosomal DNA binding
NAD-dependent histone deacetylase activity (H3-K14 specific)
activating transcription factor binding
histone deacetylase binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
NAD-dependent histone deacetylase activity (H3-K18 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Rat Genome 230 2.0 Array	1396820_at	-	-
Rat Genome 230 2.0 Array	1388761_at	-	-
Rat Genome 230 2.0 Array	1396820_PM_at	-	-
Rat Genome 230 2.0 Array	1388761_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900018878.rn.1	TC0900002309.rn.1	RTA TC
Rat Expression Set 230	1396820_PM_at	-	-
Rat Expression Set 230	1396820_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21070046	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376057	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376865	-	-
RatRef-12 Expression BeadChip	ILMN_53227	-	-