Rn02346209_g1

• Gene Symbol: RT1-Da
• Gene Name: RT1 class II, locus Da
• Gene Aliases: DA1, H2-Ea, RT1-u
• Chromosome Location: Chr.20: 4127644 - 4132616 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RT1-Da
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008847.2	NP_001008847.1	3 - 4	664		126
GenBank mRNA	AY436750.1	-	3 - 4	609		126
	AY626210.1	-	3 - 4	609		126
	AY626211.1	-	3 - 4	609		126
	AY626213.1	-	3 - 4	609		126
	AY626215.1	-	3 - 4	609		126
	AY626216.1	-	3 - 4	609		126
	AY626217.1	-	3 - 4	609		126
	AY701539.1	-	3 - 4	614		126
	BC098677.1	-	3 - 4	630	7373701	126
	FQ220763.1	-	3 - 4	652		126
	FQ220966.1	-	3 - 4	657		126
	FQ226848.1	-	3 - 4	655		126
	FQ227693.1	-	3 - 4	656		127
	FQ230207.1	-	3 - 4	655		126
	FQ232717.1	-	3 - 4	652		126
	FQ232757.1	-	2 - 3	419		126
	FQ233042.1	-	3 - 4	655		126
	FQ233454.1	-	3 - 4	647		126
	FQ233943.1	-	3 - 4	655		126
	FQ234684.1	-	3 - 4	658		127
	FQ235025.1	-	3 - 4	647		126
	KC222932.1	-	3 - 4	609		126
	KC222933.1	-	3 - 4	609		126
	KC222934.1	-	3 - 4	609		126
	KC222935.1	-	3 - 4	609		126

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001067.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene RT1-Da

Panther Classification:

Molecular Function -

major histocompatibility complex protein

Gene Ontology Categories:

Process(es)

peptide antigen assembly with MHC class II protein complex
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
polysaccharide assembly with MHC class II protein complex
immune response
biological_process
cognition

Function(s)

molecular_function
MHC class II protein complex binding
peptide antigen binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P991532	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	370147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	732463	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	236170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	868785	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P991532	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P991532	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P991532	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P367688	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P991532	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700531570	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	66343	-	-
Agilent Rat cDNA Microarray (G4105A)	700531570	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10828349	-	-
Affymetrix Rat Gene 1.0 ST Array	10828345	-	-
Affymetrix Rat Gene 1.0 ST Array	10828348	-	-
Affymetrix Rat Gene 1.0 ST Array	10828346	-	-
Affymetrix Rat Gene 1.0 ST Array	10828347	-	-
Affymetrix Rat Gene 1.0 ST Array	10828350	-	-
Affymetrix Rat Gene 1.1 ST Array	10828344	-	-
Rat Genome 230 2.0 Array	1370883_PM_at	-	-
Rat Genome 230 2.0 Array	1370883_at	-	-
Affymetrix HT Rat Focus Array	1370883_PM_at	-	-
Affymetrix HT Rat Focus Array	1370883_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000008714.rn.1	TC2000001067.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000008712.rn.1	TC2000001067.rn.1	RTA TC
Rat Expression Set 230	1370883_PM_at	-	-
Rat Expression Set 230	1370883_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10828344	-	-
Rat Genome U34 Set	M15562_at	-	-
Rat Genome U34 Set	M15562_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21136368	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376935	-	-