Rn02349707_s1 Best Coverage

• Gene Symbol: Pou3f1
• Gene Name: POU class 3 homeobox 1
• Gene Aliases: Oct-6, Otf6, Scip, Testes-1, Tst-1
• Chromosome Location: Chr.5: 142643599 - 142646580 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pou3f1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_138838.1	NP_620193.1	1	451		157
GenBank mRNA	M63712.1	-	1	312		157
	M72711.1	-	1	451		157

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001426.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pou3f1

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
epidermis development
glial cell differentiation
positive regulation of gene expression
Schwann cell development
myelination in peripheral nervous system
keratinocyte differentiation
forebrain development
myelination
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription coactivator activity
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P020168	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	584571	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	665069	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P020168	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P020168	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P020168	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P493301	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	84837	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10871804	-	-
Affymetrix Rat Gene 1.0 ST Array	10871805	-	-
Affymetrix Rat Gene 1.0 ST Array	10871803	-	-
Affymetrix Rat Gene 1.1 ST Array	10871802	-	-
Rat Genome 230 2.0 Array	1370432_PM_at	-	-
Rat Genome 230 2.0 Array	1370432_at	-	-
Affymetrix HT Rat Focus Array	1370432_PM_at	-	-
Affymetrix HT Rat Focus Array	1370432_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500009900.rn.1	TC0500001426.rn.1	RTA TC
Rat Expression Set 230	1370432_PM_at	-	-
Rat Expression Set 230	1370432_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10871802	-	-
Rat Genome U34 Set	M72711_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21629103	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1361550	-	-
RatRef-12 Expression BeadChip	ILMN_66276	-	-