Rn02395495_m1 Best Coverage

• Gene Symbol: Trim5
• Gene Name: tripartite motif-containing 5
• Gene Aliases: RGD1304579
• Chromosome Location: Chr.1: 169446774 - 169463760 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trim5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001014023.1	NP_001014045.1	5 - 6	881		68
	XM_006229912.2	XP_006229974.1	5 - 6	1367		68
GenBank mRNA	BC078926.1	-	5 - 6	881		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100006263.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trim5

Gene Ontology Categories:

Process(es)

activation of innate immune response
pattern recognition receptor signaling pathway
regulation of lipopolysaccharide-mediated signaling pathway
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of MAPK cascade
innate immune response
negative regulation of viral entry into host cell
positive regulation of DNA-binding transcription factor activity
positive regulation of NF-kappaB transcription factor activity
protein trimerization
protein K63-linked ubiquitination
negative regulation of viral release from host cell

Function(s)

ubiquitin-protein transferase activity
zinc ion binding
pattern recognition receptor activity
identical protein binding
protein homodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P798500	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	558113	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	141635	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	487320	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	627812	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	535527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	405111	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	610872	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	406700	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	18599	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48424	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	711133	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	866315	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	224557	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	66563	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	59980	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P798500	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P798500	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P798500	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P989677	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	57876	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68216	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10724380	-	-
Affymetrix Rat Gene 1.0 ST Array	10724384	-	-
Affymetrix Rat Gene 1.0 ST Array	10724383	-	-
Affymetrix Rat Gene 1.0 ST Array	10724385	-	-
Affymetrix Rat Gene 1.0 ST Array	10724382	-	-
Affymetrix Rat Gene 1.0 ST Array	10724381	-	-
Affymetrix Rat Gene 1.0 ST Array	10724386	-	-
Affymetrix Rat Gene 1.0 ST Array	10724378	-	-
Affymetrix Rat Gene 1.0 ST Array	10724379	-	-
Affymetrix Rat Gene 1.1 ST Array	10724377	-	-
Rat Genome 230 2.0 Array	1372112_PM_at	-	-
Rat Genome 230 2.0 Array	1372112_at	-	-
Affymetrix HT Rat Focus Array	1372112_at	-	-
Affymetrix HT Rat Focus Array	1372112_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100049451.rn.1	TC0100006263.rn.1	RTA TC
Rat Expression Set 230	1372112_PM_at	-	-
Rat Expression Set 230	1372112_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10724377	-	-
Rat Genome U34 Set	rc_AI012552_at	-	-