Rn02395496_g1

• Gene Symbol: Trim5
• Gene Name: tripartite motif-containing 5
• Gene Aliases: RGD1304579
• Chromosome Location: Chr.1: 169446774 - 169463760 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trim5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001014023.1	NP_001014045.1	6 - 7	977		74
	XM_006229912.2	XP_006229974.1	6 - 7	1463		74
GenBank mRNA	BC078926.1	-	6 - 7	977		74
	FQ225508.1	-	1 - 2	96		74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100006263.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trim5

Gene Ontology Categories:

Process(es)

activation of innate immune response
pattern recognition receptor signaling pathway
regulation of lipopolysaccharide-mediated signaling pathway
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of MAPK cascade
innate immune response
negative regulation of viral entry into host cell
positive regulation of DNA-binding transcription factor activity
positive regulation of NF-kappaB transcription factor activity
protein trimerization
protein K63-linked ubiquitination
negative regulation of viral release from host cell

Function(s)

ubiquitin-protein transferase activity
zinc ion binding
pattern recognition receptor activity
identical protein binding
protein homodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100049450.rn.1	TC0100006263.rn.1	RTA TC