Rn02586489_m1

• Gene Symbol: Pax8
• Gene Name: paired box 8
• Gene Aliases: -
• Chromosome Location: Chr.3: 1527316 - 1586023 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pax8
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031141.2	NP_112403.2	7 - 8	942		90
	XM_006233646.2	XP_006233708.1	7 - 8	2042		90
	XM_008761610.1	XP_008759832.1	6 - 7	2378		90
	XM_008761611.1	XP_008759833.1	6 - 7	2379		90
	XM_008761612.1	XP_008759834.1	4 - 5	2106		90
	XM_008761613.1	XP_008759835.1	6 - 7	2374		90
GenBank mRNA	BC081779.1	-	7 - 8	942	7127710	90
	X94246.1	-	6 - 7	825		90

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002637.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pax8

Gene Ontology Categories:

Process(es)

urogenital system development
metanephros development
branching involved in ureteric bud morphogenesis
kidney development
mesonephros development
mesenchymal to epithelial transition involved in metanephros morphogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
sulfur compound metabolic process
central nervous system development
cell differentiation
thyroid gland development
pronephric field specification
inner ear morphogenesis
regulation of apoptotic process
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
pronephros development
cellular response to gonadotropin stimulus
otic vesicle development
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis
metanephric epithelium development
metanephric distal convoluted tubule development
metanephric comma-shaped body morphogenesis
metanephric S-shaped body morphogenesis
metanephric nephron tubule formation
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis
regulation of metanephric nephron tubule epithelial cell differentiation
positive regulation of branching involved in ureteric bud morphogenesis
negative regulation of mesenchymal cell apoptotic process involved in metanephros development
negative regulation of apoptotic process involved in metanephric collecting duct development
negative regulation of apoptotic process involved in metanephric nephron tubule development
positive regulation of metanephric DCT cell differentiation
positive regulation of thyroid hormone generation
regulation of thyroid-stimulating hormone secretion

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
sequence-specific DNA binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0300019513.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019520.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019516.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019515.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019514.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019517.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019522.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019523.rn.1	TC0300002637.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300019518.rn.1	TC0300002637.rn.1	RTA TC