Rn02748634_m1

• Gene Symbol: Arid5a
• Gene Name: AT rich interactive domain 5A (Mrf1 like)
• Gene Aliases: -
• Chromosome Location: Chr.9: 42871913 - 42886725 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Arid5a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001034934.1	NP_001030106.1	4 - 5	373		100
	XM_006244806.2	XP_006244868.1	6 - 7	675		100
	XM_006244807.2	XP_006244869.1	6 - 7	672		100
GenBank mRNA	BC105777.1	-	4 - 5	373	7931985	100

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900000473.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Arid5a

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

chondrocyte differentiation
regulation of transcription from RNA polymerase II promoter
positive regulation of histone acetylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

chromatin binding
transcription factor binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P129563	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	422194	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	314586	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	354724	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P129563	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P129563	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P129563	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P704967	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10922495	-	-
Affymetrix Rat Gene 1.0 ST Array	10922496	-	-
Affymetrix Rat Gene 1.0 ST Array	10922498	-	-
Affymetrix Rat Gene 1.0 ST Array	10922497	-	-
Affymetrix Rat Gene 1.1 ST Array	10922492	-	-
Rat Genome 230 2.0 Array	1397437_PM_at	-	-
Rat Genome 230 2.0 Array	1379311_PM_at	-	-
Rat Genome 230 2.0 Array	1397437_at	-	-
Rat Genome 230 2.0 Array	1379311_at	-	-
Affymetrix HT Rat Focus Array	1397437_at	-	-
Affymetrix HT Rat Focus Array	1379311_at	-	-
Affymetrix HT Rat Focus Array	1379311_PM_at	-	-
Affymetrix HT Rat Focus Array	1397437_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900003654.rn.1	TC0900000473.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0900003655.rn.1	TC0900000473.rn.1	RTA TC
Rat Expression Set 230	1379311_at	-	-
Rat Expression Set 230	1379311_PM_at	-	-
Rat Expression Set 230	1397437_PM_at	-	-
Rat Expression Set 230	1397437_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10922492	-	-
Rat Genome U34 Set	rc_AI177813_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21864896	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1372458	-	-