Rn03416316_m1

Gene Symbol:

Hoxa9 LOC100911622 NEWGENE_1587253

Gene Name:

homeobox A9

homeobox protein Hox-A7-like

homeobox A7

Gene Aliases:

Hox1r5, Hoxa7

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Hoxa7

Chromosome Location:

Chr.4: 82184299 - 82187871 on Build Rnor_6.0

Chromosome Location:

Chr.4|NW_007906169: 85714 - 89277 on Build Rnor_6.0

Chromosome Location:

Chr.4: 82270103 - 82273666 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

-

Assay Details

Gene Symbol: Hoxa9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109233.2	NP_001102703.2		476		53
	XM_006236501.2	XP_006236563.1		1885		53
	XM_006236503.2	XP_006236565.1		1906		53
	XM_008762907.1	XP_008761129.1		1133		53

Gene Symbol: LOC100911622
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_003752181.3	XP_003752229.1	2 - 3	1885		53
	XM_006257702.2	XP_006257764.1	2 - 3	1906		53
	XM_008773710.1	XP_008771932.1	1 - 2	2149		53
	XM_008773711.1	XP_008771933.1	2 - 3	1133		53

Gene Symbol: NEWGENE_1587253
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008762940.1	XP_008761162.1	1 - 2	2149		53
	XM_008762941.1	XP_008761163.1	2 - 3	1906		53
	XM_008762942.1	XP_008761164.1	2 - 3	1885		53
	XM_008762943.1	XP_008761165.1	2 - 3	1133		53

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect transcript(s) from off target gene(s). Please contact Tech Support if you need more information.

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Rattus norvegicus, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
angiogenesis
negative regulation of cell-matrix adhesion
negative regulation of leukocyte migration
transcription, DNA-templated
regulation of transcription, DNA-templated
multicellular organism development
anterior/posterior pattern specification
negative regulation of keratinocyte differentiation
negative regulation of monocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
embryonic skeletal system morphogenesis
stem cell differentiation

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
DNA binding
DNA-binding transcription factor activity
transcription factor binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P099457	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	38619	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	55473	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P099457	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P099457	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P099457	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P129029	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10862568	-	-
Affymetrix Rat Gene 1.0 ST Array	10862569	-	-
Affymetrix Rat Gene 1.1 ST Array	10862567	-	-
Rat Genome 230 2.0 Array	1393992_at	-	-
Rat Genome 230 2.0 Array	1393992_PM_at	-	-
Affymetrix HT Rat Focus Array	1393992_PM_at	-	-
Affymetrix HT Rat Focus Array	1393992_at	-	-
Rat Expression Set 230	1393992_at	-	-
Rat Expression Set 230	1393992_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10862567	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1372418	-	-