Rn04218453_g1 Best Coverage

• Gene Symbol: Arid5a
• Gene Name: AT rich interactive domain 5A (Mrf1 like)
• Gene Aliases: -
• Chromosome Location: Chr.9: 42871913 - 42886725 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Arid5a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001034934.1	NP_001030106.1	3 - 4	205		69
	XM_006244806.2	XP_006244868.1	5 - 6	507		69
	XM_006244807.2	XP_006244869.1	5 - 6	504		69
GenBank mRNA	BC105777.1	-	3 - 4	205	7931985	69

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900000473.rn.1

Additional Information:

This assay is in the 5'UTR region of the BC105777.1,NM_001034934.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Arid5a

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

chondrocyte differentiation
regulation of transcription from RNA polymerase II promoter
positive regulation of histone acetylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

chromatin binding
transcription factor binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0900003653.rn.1	TC0900000473.rn.1	RTA TC