Rn04219408_m1 Best Coverage

• Gene Symbol: S100b
• Gene Name: S100 calcium binding protein B
• Gene Aliases: S100P
• Chromosome Location: Chr.20: 13130633 - 13142856 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: S100b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013191.1	NP_037323.1	2 - 3	261		67
	XM_008772868.1	XP_008771090.1	2 - 3	260		67
GenBank mRNA	BC087026.1	-	2 - 3	199	7193740	67
	FQ213381.1	-	2 - 3	203		67
	FQ213687.1	-	2 - 3	253		67
	FQ213774.1	-	2 - 3	255		67
	FQ213840.1	-	2 - 3	211		67
	FQ214218.1	-	2 - 3	205		67
	FQ214292.1	-	2 - 3	234		67
	FQ214554.1	-	2 - 3	203		67
	M15705.1	-	1 - 2	128		67
	M54919.1	-	2 - 3	261		67
	X01090.1	-	2 - 3	261		67

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001337.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene S100b

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Process(es)

learning or memory
memory
positive regulation of cell proliferation
regulation of cell shape
positive regulation of apoptotic process
positive regulation of I-kappaB kinase/NF-kappaB signaling
regulation of neuronal synaptic plasticity
astrocyte differentiation
positive regulation of synaptic transmission
response to glucocorticoid
response to methylmercury
long-term synaptic potentiation
cellular response to hypoxia
negative regulation of skeletal muscle cell differentiation

Function(s)

receptor binding
calcium ion binding
protein binding
zinc ion binding
identical protein binding
protein homodimerization activity
S100 protein binding
tau protein binding
calcium-dependent protein binding
RAGE receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P15530	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P109327	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	195148	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	528062	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	352002	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	623273	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167408	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	648677	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	922202	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258920	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	10198	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	78741	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	231918	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	171362	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	525194	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	956151	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	141863	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	547315	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	337902	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258728	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899875	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	472870	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	816475	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	183219	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	173850	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	100325	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	55405	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	81644	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P109327	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15530	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15530	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P109327	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P109327	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P15530	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15530	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	27832	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	21280	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	43487	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64551	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10832442	-	-
Affymetrix Rat Gene 1.0 ST Array	10832443	-	-
Affymetrix Rat Gene 1.0 ST Array	10832444	-	-
Affymetrix Rat Gene 1.1 ST Array	10832441	-	-
Rat Genome 230 2.0 Array	1386903_PM_at	-	-
Rat Genome 230 2.0 Array	1386903_at	-	-
Affymetrix HT Rat Focus Array	1386903_at	-	-
Affymetrix HT Rat Focus Array	1386903_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000011039.rn.1	TC2000001337.rn.1	RTA TC
Rat Expression Set 230	1386903_at	-	-
Rat Expression Set 230	1386903_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10832441	-	-
Rat Genome U34 Set	rc_AI146214_at	-	-
Rat Genome U34 Set	S53527mRNA_s_at	-	-
Rat Genome U34 Set	S53527mRNA_s_at	-	-
Rat Genome U34 Set	rc_AI146214_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21345231	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373043	-	-
RatRef-12 Expression BeadChip	ILMN_59511	-	-