Rn04219475_g1 Best Coverage

• Gene Symbol: Pfn1
• Gene Name: profilin 1
• Gene Aliases: -
• Chromosome Location: Chr.10: 57273003 - 57275708 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pfn1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022511.2	NP_071956.2	2 - 3	444		82
GenBank mRNA	BC062405.1	-	2 - 3	444		82
	FQ217736.1	-	2 - 3	478		82
	FQ221987.1	-	2 - 3	478		82
	FQ227505.1	-	2 - 3	479		82
	FQ228171.1	-	2 - 3	478		82
	FQ232047.1	-	2 - 3	477		82
	FQ232161.1	-	2 - 3	434		82
	FQ232713.1	-	2 - 3	448		82
	FQ235292.1	-	2 - 3	479		82
	X96967.1	-	2 - 3	327		82

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000004412.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pfn1

Gene Ontology Categories:

Process(es)

neural tube closure
regulation of transcription by RNA polymerase II
actin polymerization or depolymerization
response to organic substance
positive regulation of epithelial cell migration
negative regulation of actin filament polymerization
positive regulation of actin filament polymerization
negative regulation of actin filament bundle assembly
positive regulation of ATPase activity
positive regulation of transcription by RNA polymerase II
positive regulation of viral transcription
positive regulation of DNA metabolic process
positive regulation of stress fiber assembly
negative regulation of stress fiber assembly
cellular response to growth factor stimulus
positive regulation of ruffle assembly

Function(s)

adenyl-nucleotide exchange factor activity
RNA binding
actin binding
signaling receptor binding
protein binding
phosphatidylinositol-4,5-bisphosphate binding
proline-rich region binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P132470	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	130639	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	89214	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P132470	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P132470	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P132470	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P132470	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700544842	-	-
Agilent Rat cDNA Microarray (G4105A)	700544842	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10744497	-	-
Affymetrix Rat Gene 1.0 ST Array	10744496	-	-
Affymetrix Rat Gene 1.1 ST Array	10744494	-	-
Rat Genome 230 2.0 Array	1367605_PM_at	-	-
Rat Genome 230 2.0 Array	1367605_at	-	-
Affymetrix HT Rat Focus Array	1367605_at	-	-
Affymetrix HT Rat Focus Array	1367605_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000041473.rn.1	TC1000004412.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000041474.rn.1	TC1000004412.rn.1	RTA TC
Rat Expression Set 230	1367605_at	-	-
Rat Expression Set 230	1367605_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10744494	-	-
Rat Genome U34 Set	rc_AA817887_at	-	-
Rat Genome U34 Set	rc_AI235687_f_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22334943	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371186	-	-
RatRef-12 Expression BeadChip	ILMN_66662	-	-