Rn04219635_m1 Best Coverage

• Gene Symbol: Cdk5
• Gene Name: cyclin-dependent kinase 5
• Gene Aliases: -
• Chromosome Location: Chr.4: 7282945 - 7287427 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdk5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_080885.1	NP_543161.1	5 - 6	402		95
GenBank mRNA	L02121.1	-	5 - 6	402		95

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400000110.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Protein Kinase, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdk5

Panther Classification:

Molecular Function -

non-receptor serine/threonine protein kinase

Gene Ontology Categories:

Process(es)

neuron migration
synaptic transmission, dopaminergic
protein phosphorylation
intracellular protein transport
exocytosis
nucleocytoplasmic transport
apoptotic process
cell-matrix adhesion
axonogenesis
synapse assembly
central nervous system development
skeletal muscle tissue development
motor neuron axon guidance
associative learning
visual learning
response to wounding
Schwann cell development
phosphorylation
cell migration
peptidyl-serine phosphorylation
peptidyl-threonine phosphorylation
sensory perception of pain
telencephalon development
cerebellum development
cerebellar cortex development
cerebellar cortex formation
hippocampus development
layer formation in cerebral cortex
central nervous system neuron development
cerebral cortex development
corpus callosum development
neuron differentiation
regulation of cell migration
negative regulation of axon extension
cortical actin cytoskeleton organization
forebrain development
neuron projection development
negative regulation of protein ubiquitination
negative regulation of synaptic plasticity
positive regulation of protein binding
receptor catabolic process
serine phosphorylation of STAT3 protein
synaptic transmission, glutamatergic
protein localization to synapse
response to cocaine
receptor clustering
positive regulation of neuron apoptotic process
regulated exocytosis
negative regulation of cell cycle
positive regulation of protein kinase activity
negative regulation of proteolysis
negative regulation of transcription, DNA-templated
positive regulation of calcium ion-dependent exocytosis
protein autophosphorylation
negative regulation of protein export from nucleus
behavioral response to cocaine
regulation of synaptic plasticity
synaptic vesicle endocytosis
rhythmic process
axon extension
oligodendrocyte differentiation
neuron projection morphogenesis
dendrite morphogenesis
cell division
neuron apoptotic process
regulation of postsynaptic membrane potential
excitatory postsynaptic potential
regulation of dendritic spine morphogenesis
calcium ion import
positive regulation of protein targeting to membrane
negative regulation of neuron death
positive regulation of receptor activity

Function(s)

p53 binding
protein kinase activity
protein serine/threonine kinase activity
cyclin-dependent protein serine/threonine kinase activity
ErbB-2 class receptor binding
protein binding
ATP binding
cytoskeletal protein binding
kinase activity
protein kinase binding
acetylcholine receptor activator activity
ErbB-3 class receptor binding
ephrin receptor binding
tau-protein kinase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P294687	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	766196	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	502977	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	537738	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	748967	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	24148	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P294687	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P294687	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P294687	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P294687	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700819107	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	40372	-	-
Agilent Rat cDNA Microarray (G4105A)	700819107	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10852918	-	-
Affymetrix Rat Gene 1.0 ST Array	10852913	-	-
Affymetrix Rat Gene 1.0 ST Array	10852912	-	-
Affymetrix Rat Gene 1.0 ST Array	10852910	-	-
Affymetrix Rat Gene 1.0 ST Array	10852911	-	-
Affymetrix Rat Gene 1.0 ST Array	10852916	-	-
Affymetrix Rat Gene 1.0 ST Array	10852919	-	-
Affymetrix Rat Gene 1.0 ST Array	10852908	-	-
Affymetrix Rat Gene 1.0 ST Array	10852917	-	-
Affymetrix Rat Gene 1.0 ST Array	10852909	-	-
Affymetrix Rat Gene 1.0 ST Array	10852915	-	-
Affymetrix Rat Gene 1.0 ST Array	10852914	-	-
Affymetrix Rat Gene 1.1 ST Array	10852907	-	-
Rat Genome 230 2.0 Array	1368088_at	-	-
Rat Genome 230 2.0 Array	1368088_PM_at	-	-
Affymetrix HT Rat Focus Array	1368088_PM_at	-	-
Affymetrix HT Rat Focus Array	1368088_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400000794.rn.1	TC0400000110.rn.1	RTA TC
Rat Expression Set 230	1368088_at	-	-
Rat Expression Set 230	1368088_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10852907	-	-
Rat Genome U34 Set	L02121_at	-	-
Rat Genome U34 Set	L02121_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22021208	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1364498	-	-
RatRef-12 Expression BeadChip	ILMN_68779	-	-